Results 41 - 49 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8091 | 3' | -56 | NC_001978.2 | + | 32981 | 0.68 | 0.426368 |
Target: 5'- cCGCgAAUGGCaGGggGCACGaccGGCUCAg -3' miRNA: 3'- cGUG-UUGCCGgCCuuCGUGU---UCGGGU- -5' |
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8091 | 3' | -56 | NC_001978.2 | + | 32991 | 0.68 | 0.456219 |
Target: 5'- cGUACGAC-GCUGGGgugaAGCuucuuCGAGCCCGg -3' miRNA: 3'- -CGUGUUGcCGGCCU----UCGu----GUUCGGGU- -5' |
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8091 | 3' | -56 | NC_001978.2 | + | 33026 | 0.8 | 0.077649 |
Target: 5'- -gGCuACGGCCGGAAGCA--AGCCCGc -3' miRNA: 3'- cgUGuUGCCGGCCUUCGUguUCGGGU- -5' |
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8091 | 3' | -56 | NC_001978.2 | + | 33414 | 0.66 | 0.551742 |
Target: 5'- aCugAACGGCgGGuacGGCuACGGGCCgAa -3' miRNA: 3'- cGugUUGCCGgCCu--UCG-UGUUCGGgU- -5' |
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8091 | 3' | -56 | NC_001978.2 | + | 35475 | 0.7 | 0.327607 |
Target: 5'- cGCAgCAACGGCguucggccUGGGAGCGCucGCCUu -3' miRNA: 3'- -CGU-GUUGCCG--------GCCUUCGUGuuCGGGu -5' |
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8091 | 3' | -56 | NC_001978.2 | + | 37415 | 0.68 | 0.466417 |
Target: 5'- gGCACuGACcGCCGGAGuGCGCuccGCCUAc -3' miRNA: 3'- -CGUG-UUGcCGGCCUU-CGUGuu-CGGGU- -5' |
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8091 | 3' | -56 | NC_001978.2 | + | 37501 | 0.68 | 0.423447 |
Target: 5'- uGCGCAugaagcuugugaccgAUGGCCGGuuugaagucgagcggGGGCGCAccugggaAGCCCGc -3' miRNA: 3'- -CGUGU---------------UGCCGGCC---------------UUCGUGU-------UCGGGU- -5' |
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8091 | 3' | -56 | NC_001978.2 | + | 38961 | 0.69 | 0.38568 |
Target: 5'- cGCGCAACGGCCGaauGGUcaaugucgucaucaACAAGCUUg -3' miRNA: 3'- -CGUGUUGCCGGCcu-UCG--------------UGUUCGGGu -5' |
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8091 | 3' | -56 | NC_001978.2 | + | 39429 | 0.67 | 0.519054 |
Target: 5'- gGUugGACGGCaGGggGCGCGgcaaggGGCUUu -3' miRNA: 3'- -CGugUUGCCGgCCuuCGUGU------UCGGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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