miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8091 3' -56 NC_001978.2 + 13810 0.75 0.168631
Target:  5'- -aGCGACGGCCGGAGccGCACccguGGCCa- -3'
miRNA:   3'- cgUGUUGCCGGCCUU--CGUGu---UCGGgu -5'
8091 3' -56 NC_001978.2 + 14281 0.67 0.497691
Target:  5'- -gACAA-GGCCGGucacguuCGCGAGCCCGc -3'
miRNA:   3'- cgUGUUgCCGGCCuuc----GUGUUCGGGU- -5'
8091 3' -56 NC_001978.2 + 18822 0.67 0.491359
Target:  5'- cGCGCGGCGuuccccgcuaucgacGCUGcGGAGCGCcuGAGCCUg -3'
miRNA:   3'- -CGUGUUGC---------------CGGC-CUUCGUG--UUCGGGu -5'
8091 3' -56 NC_001978.2 + 18954 0.71 0.311574
Target:  5'- gGCACGcUGaGCCGGAcgcGCACAAGUCUg -3'
miRNA:   3'- -CGUGUuGC-CGGCCUu--CGUGUUCGGGu -5'
8091 3' -56 NC_001978.2 + 19813 0.67 0.508325
Target:  5'- gGCACcAUGGCCacgaaGAAGCugAAGCUgAa -3'
miRNA:   3'- -CGUGuUGCCGGc----CUUCGugUUCGGgU- -5'
8091 3' -56 NC_001978.2 + 20206 0.67 0.515826
Target:  5'- gGCACGucgacaacaucaagACGGCCGaGAcGGUugAGGCCg- -3'
miRNA:   3'- -CGUGU--------------UGCCGGC-CU-UCGugUUCGGgu -5'
8091 3' -56 NC_001978.2 + 20681 0.68 0.456219
Target:  5'- cGUugAGCGGCaGGggGCGCAcaacuCCCu -3'
miRNA:   3'- -CGugUUGCCGgCCuuCGUGUuc---GGGu -5'
8091 3' -56 NC_001978.2 + 20903 0.7 0.344243
Target:  5'- cCGCuACGGCCGGAcggAGCuu--GCCCGg -3'
miRNA:   3'- cGUGuUGCCGGCCU---UCGuguuCGGGU- -5'
8091 3' -56 NC_001978.2 + 21468 0.67 0.508325
Target:  5'- gGCACAGCGGCaggcuucccgguCGGggGCuCGAcUCCGc -3'
miRNA:   3'- -CGUGUUGCCG------------GCCuuCGuGUUcGGGU- -5'
8091 3' -56 NC_001978.2 + 22911 0.66 0.573879
Target:  5'- cGCGCGAcuagggucCGGCCGGAccaauccCACAccugAGCCCc -3'
miRNA:   3'- -CGUGUU--------GCCGGCCUuc-----GUGU----UCGGGu -5'
8091 3' -56 NC_001978.2 + 23962 0.66 0.551742
Target:  5'- aGCGCGACGGgcuuCCGGcGGGUACu-GCCaCAg -3'
miRNA:   3'- -CGUGUUGCC----GGCC-UUCGUGuuCGG-GU- -5'
8091 3' -56 NC_001978.2 + 24998 0.66 0.573879
Target:  5'- uGCACuucGCGcacGCCGGAAGCAUGuuguGCgCAg -3'
miRNA:   3'- -CGUGu--UGC---CGGCCUUCGUGUu---CGgGU- -5'
8091 3' -56 NC_001978.2 + 26196 0.73 0.215919
Target:  5'- gGCAUggacuGACGGCCGGAucaAGUACGcGUCCGg -3'
miRNA:   3'- -CGUG-----UUGCCGGCCU---UCGUGUuCGGGU- -5'
8091 3' -56 NC_001978.2 + 26391 0.7 0.360601
Target:  5'- cGCGCGAcucCGGCaggcaacCGGcGAGCACAAGCgCCGc -3'
miRNA:   3'- -CGUGUU---GCCG-------GCC-UUCGUGUUCG-GGU- -5'
8091 3' -56 NC_001978.2 + 26789 0.68 0.436191
Target:  5'- aGgGCAACGG-CGGggGCAUu--CCCAa -3'
miRNA:   3'- -CgUGUUGCCgGCCuuCGUGuucGGGU- -5'
8091 3' -56 NC_001978.2 + 27311 0.67 0.529871
Target:  5'- cCGCGAUuggugugaGGCUGaGggGCugAAGUCCAc -3'
miRNA:   3'- cGUGUUG--------CCGGC-CuuCGugUUCGGGU- -5'
8091 3' -56 NC_001978.2 + 28084 0.68 0.476732
Target:  5'- -aACGGCGGucuuCCGGucGCugGGGCUCAc -3'
miRNA:   3'- cgUGUUGCC----GGCCuuCGugUUCGGGU- -5'
8091 3' -56 NC_001978.2 + 28292 0.67 0.508325
Target:  5'- -aGCGuCGGCCGGAuGCuCAGGCgCGc -3'
miRNA:   3'- cgUGUuGCCGGCCUuCGuGUUCGgGU- -5'
8091 3' -56 NC_001978.2 + 29748 0.66 0.562781
Target:  5'- aGCACGACGGaCCGGAAcugauCACcc-CCCGu -3'
miRNA:   3'- -CGUGUUGCC-GGCCUUc----GUGuucGGGU- -5'
8091 3' -56 NC_001978.2 + 32152 0.74 0.196844
Target:  5'- gGCACGGuCGGCCGGAacGGCAauacugaucuuGCCCGg -3'
miRNA:   3'- -CGUGUU-GCCGGCCU--UCGUguu--------CGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.