Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 8091 | 3' | -56 | NC_001978.2 | + | 18954 | 0.71 | 0.311574 |
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Target: 5'- gGCACGcUGaGCCGGAcgcGCACAAGUCUg -3' miRNA: 3'- -CGUGUuGC-CGGCCUu--CGUGUUCGGGu -5' |
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| 8091 | 3' | -56 | NC_001978.2 | + | 4525 | 0.71 | 0.303783 |
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Target: 5'- uCGCAGCGuGCCGGAAG-ACGugcGCCCc -3' miRNA: 3'- cGUGUUGC-CGGCCUUCgUGUu--CGGGu -5' |
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| 8091 | 3' | -56 | NC_001978.2 | + | 4205 | 0.71 | 0.281314 |
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Target: 5'- gGCuCAAUGGCUGGggGagcggggGCAGGCUCAg -3' miRNA: 3'- -CGuGUUGCCGGCCuuCg------UGUUCGGGU- -5' |
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| 8091 | 3' | -56 | NC_001978.2 | + | 26196 | 0.73 | 0.215919 |
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Target: 5'- gGCAUggacuGACGGCCGGAucaAGUACGcGUCCGg -3' miRNA: 3'- -CGUG-----UUGCCGGCCU---UCGUGUuCGGGU- -5' |
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| 8091 | 3' | -56 | NC_001978.2 | + | 32152 | 0.74 | 0.196844 |
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Target: 5'- gGCACGGuCGGCCGGAacGGCAauacugaucuuGCCCGg -3' miRNA: 3'- -CGUGUU-GCCGGCCU--UCGUguu--------CGGGU- -5' |
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| 8091 | 3' | -56 | NC_001978.2 | + | 13810 | 0.75 | 0.168631 |
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Target: 5'- -aGCGACGGCCGGAGccGCACccguGGCCa- -3' miRNA: 3'- cgUGUUGCCGGCCUU--CGUGu---UCGGgu -5' |
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| 8091 | 3' | -56 | NC_001978.2 | + | 2925 | 0.77 | 0.127151 |
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Target: 5'- aGCGCucGACGGCauuGAGGCGCGAGCCUg -3' miRNA: 3'- -CGUG--UUGCCGgc-CUUCGUGUUCGGGu -5' |
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| 8091 | 3' | -56 | NC_001978.2 | + | 33026 | 0.8 | 0.077649 |
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Target: 5'- -gGCuACGGCCGGAAGCA--AGCCCGc -3' miRNA: 3'- cgUGuUGCCGGCCUUCGUguUCGGGU- -5' |
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| 8091 | 3' | -56 | NC_001978.2 | + | 11670 | 1.1 | 0.000418 |
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Target: 5'- gGCACAACGGCCGGAAGCACAAGCCCAg -3' miRNA: 3'- -CGUGUUGCCGGCCUUCGUGUUCGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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