Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8093 | 3' | -55.1 | NC_001978.2 | + | 36891 | 0.68 | 0.549225 |
Target: 5'- gAGG-UCGCugcCGCuGCCgGUCGgCACCCu -3' miRNA: 3'- -UCCaAGCGuuaGUG-CGG-CAGC-GUGGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 3738 | 0.68 | 0.542689 |
Target: 5'- cAGGUUCcggaAAUCGCgcgaaucuuuggcguGCCGcCGCACCUg -3' miRNA: 3'- -UCCAAGcg--UUAGUG---------------CGGCaGCGUGGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 16695 | 0.68 | 0.538346 |
Target: 5'- cGGUcaaCGCAuGUCgGCGCCGUucCGCuGCCCa -3' miRNA: 3'- uCCAa--GCGU-UAG-UGCGGCA--GCG-UGGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 954 | 0.68 | 0.527542 |
Target: 5'- cGGcuucgUCGCGcuUCAUGCgGUCGCGCUUc -3' miRNA: 3'- uCCa----AGCGUu-AGUGCGgCAGCGUGGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 22738 | 0.68 | 0.526466 |
Target: 5'- cGGcgUCGUGuucGUCGCuGCCGUCGUcgggcucGCCCu -3' miRNA: 3'- uCCa-AGCGU---UAGUG-CGGCAGCG-------UGGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 11122 | 0.68 | 0.523242 |
Target: 5'- uAGGUagGaaccgGAUCACGCCGgagacguccgcaGCGCCCa -3' miRNA: 3'- -UCCAagCg----UUAGUGCGGCag----------CGUGGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 10219 | 0.68 | 0.516819 |
Target: 5'- aGGGcUUGCuucguggauucGAUUAcCGCCGUCGCGCUUg -3' miRNA: 3'- -UCCaAGCG-----------UUAGU-GCGGCAGCGUGGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 12846 | 0.68 | 0.515752 |
Target: 5'- cGGGUggcgucggccguaUCGCGcUUAUGUCGUCGgGCUCg -3' miRNA: 3'- -UCCA-------------AGCGUuAGUGCGGCAGCgUGGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 18900 | 0.68 | 0.506185 |
Target: 5'- cAGGcgcucCGCAgcGUCgauagcggggaACGCCGcgCGCACCCa -3' miRNA: 3'- -UCCaa---GCGU--UAG-----------UGCGGCa-GCGUGGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 17515 | 0.68 | 0.506185 |
Target: 5'- ----gCGCAGauaCACGCCGUCGC-CCUc -3' miRNA: 3'- uccaaGCGUUa--GUGCGGCAGCGuGGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 18351 | 0.69 | 0.495646 |
Target: 5'- aAGG-UCGUcacGUC-CGUCGUCGuCGCCCu -3' miRNA: 3'- -UCCaAGCGu--UAGuGCGGCAGC-GUGGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 29426 | 0.69 | 0.495646 |
Target: 5'- gGGGgUCGCuguAUgGCGCCGaCGUgugACCCu -3' miRNA: 3'- -UCCaAGCGu--UAgUGCGGCaGCG---UGGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 30995 | 0.69 | 0.495646 |
Target: 5'- uGGG--CGCA--CAUGCCuuccauGUCGCACCCg -3' miRNA: 3'- -UCCaaGCGUuaGUGCGG------CAGCGUGGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 37324 | 0.69 | 0.481061 |
Target: 5'- uAGcUUCGCGAgcaccugacggaGCGCCGUC-CGCCCg -3' miRNA: 3'- -UCcAAGCGUUag----------UGCGGCAGcGUGGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 5393 | 0.7 | 0.4347 |
Target: 5'- cGGGUUCGC-GUCggACGUCGUgaaggucgaCGCGCCa -3' miRNA: 3'- -UCCAAGCGuUAG--UGCGGCA---------GCGUGGg -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 5285 | 0.7 | 0.4347 |
Target: 5'- cGGGUUaccgGCcuUCGUGCCGUCGCGCUUc -3' miRNA: 3'- -UCCAAg---CGuuAGUGCGGCAGCGUGGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 34138 | 0.7 | 0.4347 |
Target: 5'- cGGGUgUGC-GUC-CGCCGgagCGUGCCCa -3' miRNA: 3'- -UCCAaGCGuUAGuGCGGCa--GCGUGGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 13243 | 0.7 | 0.424 |
Target: 5'- cGGGUUCGCcGUCGCggagcaccacaagGCCGgaaCGCCCa -3' miRNA: 3'- -UCCAAGCGuUAGUG-------------CGGCagcGUGGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 34637 | 0.7 | 0.415364 |
Target: 5'- cGGGUUCGagccgACGCCGacugagccccgUUGCACCCg -3' miRNA: 3'- -UCCAAGCguuagUGCGGC-----------AGCGUGGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 16255 | 0.7 | 0.415364 |
Target: 5'- cGGGUcCGaCGGUCACGCUuacCGCugCCg -3' miRNA: 3'- -UCCAaGC-GUUAGUGCGGca-GCGugGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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