miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8093 3' -55.1 NC_001978.2 + 343 0.71 0.369415
Target:  5'- -cGUUacUGCGAgcuUCACGaCCGUCGCGCCg -3'
miRNA:   3'- ucCAA--GCGUU---AGUGC-GGCAGCGUGGg -5'
8093 3' -55.1 NC_001978.2 + 6924 0.7 0.396565
Target:  5'- cGGGUgCGCGGUCGCGUCuaucagUGaCACCCg -3'
miRNA:   3'- -UCCAaGCGUUAGUGCGGca----GC-GUGGG- -5'
8093 3' -55.1 NC_001978.2 + 31005 0.7 0.405896
Target:  5'- aGGcGUUCGCuaa-GCGCUauGUCGCugCCg -3'
miRNA:   3'- -UC-CAAGCGuuagUGCGG--CAGCGugGG- -5'
8093 3' -55.1 NC_001978.2 + 4385 0.7 0.415364
Target:  5'- uGGg--GCAGggGCGCCGUCGCugCg -3'
miRNA:   3'- uCCaagCGUUagUGCGGCAGCGugGg -5'
8093 3' -55.1 NC_001978.2 + 29426 0.69 0.495646
Target:  5'- gGGGgUCGCuguAUgGCGCCGaCGUgugACCCu -3'
miRNA:   3'- -UCCaAGCGu--UAgUGCGGCaGCG---UGGG- -5'
8093 3' -55.1 NC_001978.2 + 18351 0.69 0.495646
Target:  5'- aAGG-UCGUcacGUC-CGUCGUCGuCGCCCu -3'
miRNA:   3'- -UCCaAGCGu--UAGuGCGGCAGC-GUGGG- -5'
8093 3' -55.1 NC_001978.2 + 34138 0.7 0.4347
Target:  5'- cGGGUgUGC-GUC-CGCCGgagCGUGCCCa -3'
miRNA:   3'- -UCCAaGCGuUAGuGCGGCa--GCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 34637 0.7 0.415364
Target:  5'- cGGGUUCGagccgACGCCGacugagccccgUUGCACCCg -3'
miRNA:   3'- -UCCAAGCguuagUGCGGC-----------AGCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 16255 0.7 0.415364
Target:  5'- cGGGUcCGaCGGUCACGCUuacCGCugCCg -3'
miRNA:   3'- -UCCAaGC-GUUAGUGCGGca-GCGugGG- -5'
8093 3' -55.1 NC_001978.2 + 11122 0.68 0.523242
Target:  5'- uAGGUagGaaccgGAUCACGCCGgagacguccgcaGCGCCCa -3'
miRNA:   3'- -UCCAagCg----UUAGUGCGGCag----------CGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 26189 0.67 0.582235
Target:  5'- aAGG-UCGCccagGAUgCGCGCagCGUCGgCGCCCu -3'
miRNA:   3'- -UCCaAGCG----UUA-GUGCG--GCAGC-GUGGG- -5'
8093 3' -55.1 NC_001978.2 + 30929 0.67 0.593335
Target:  5'- aAGGagUGCuugagaauGUCGCGCUgaGUgGCGCCCa -3'
miRNA:   3'- -UCCaaGCGu-------UAGUGCGG--CAgCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 38965 0.67 0.615627
Target:  5'- aAGG--CGCcuUCcCGCCGaCGUACCCg -3'
miRNA:   3'- -UCCaaGCGuuAGuGCGGCaGCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 23846 0.66 0.6268
Target:  5'- ---gUCgGCAAUCGCGUCGUUGUACg- -3'
miRNA:   3'- uccaAG-CGUUAGUGCGGCAGCGUGgg -5'
8093 3' -55.1 NC_001978.2 + 9878 0.66 0.6268
Target:  5'- --cUUCGC---CGCGCCGUCGaccuuGCCCa -3'
miRNA:   3'- uccAAGCGuuaGUGCGGCAGCg----UGGG- -5'
8093 3' -55.1 NC_001978.2 + 17914 0.66 0.637978
Target:  5'- --cUUCGCccggCACGCCGUCaGCGUCCu -3'
miRNA:   3'- uccAAGCGuua-GUGCGGCAG-CGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 34103 0.66 0.637978
Target:  5'- uGGGaaCGCGuacaGUcCGCGCgaGUCGCcACCCa -3'
miRNA:   3'- -UCCaaGCGU----UA-GUGCGg-CAGCG-UGGG- -5'
8093 3' -55.1 NC_001978.2 + 8342 0.66 0.649151
Target:  5'- cGGUUCGCAGagAUGuuG-CGCuuCCg -3'
miRNA:   3'- uCCAAGCGUUagUGCggCaGCGugGG- -5'
8093 3' -55.1 NC_001978.2 + 27500 0.66 0.671437
Target:  5'- cAGGcgcgUCaGCGAacuUCACGCCGacaagCGCaauACCCg -3'
miRNA:   3'- -UCCa---AG-CGUU---AGUGCGGCa----GCG---UGGG- -5'
8093 3' -55.1 NC_001978.2 + 12962 1.13 0.000438
Target:  5'- cAGGUUCGCAAUCACGCCGUCGCACCCg -3'
miRNA:   3'- -UCCAAGCGUUAGUGCGGCAGCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.