miRNA display CGI


Results 21 - 40 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8093 3' -55.1 NC_001978.2 + 10614 0.66 0.660308
Target:  5'- cGG-UCGCAuccuGUCggcaGCGUCGUCGUugCUc -3'
miRNA:   3'- uCCaAGCGU----UAG----UGCGGCAGCGugGG- -5'
8093 3' -55.1 NC_001978.2 + 10843 0.75 0.218527
Target:  5'- cGGagUCGCccaguucagaagaucGAUCACGCCGUUgauaGCGCCCu -3'
miRNA:   3'- uCCa-AGCG---------------UUAGUGCGGCAG----CGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 11122 0.68 0.523242
Target:  5'- uAGGUagGaaccgGAUCACGCCGgagacguccgcaGCGCCCa -3'
miRNA:   3'- -UCCAagCg----UUAGUGCGGCag----------CGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 11393 0.72 0.335243
Target:  5'- cAGGgcuucCGUGAacUCAgCGCgGUCGCGCCCg -3'
miRNA:   3'- -UCCaa---GCGUU--AGU-GCGgCAGCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 12846 0.68 0.515752
Target:  5'- cGGGUggcgucggccguaUCGCGcUUAUGUCGUCGgGCUCg -3'
miRNA:   3'- -UCCA-------------AGCGUuAGUGCGGCAGCgUGGG- -5'
8093 3' -55.1 NC_001978.2 + 12962 1.13 0.000438
Target:  5'- cAGGUUCGCAAUCACGCCGUCGCACCCg -3'
miRNA:   3'- -UCCAAGCGUUAGUGCGGCAGCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 13243 0.7 0.424
Target:  5'- cGGGUUCGCcGUCGCggagcaccacaagGCCGgaaCGCCCa -3'
miRNA:   3'- -UCCAAGCGuUAGUG-------------CGGCagcGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 16016 0.74 0.240488
Target:  5'- cGGGaaccgUCG-AGUCgGCGcCCGUCGCGCCCg -3'
miRNA:   3'- -UCCa----AGCgUUAG-UGC-GGCAGCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 16255 0.7 0.415364
Target:  5'- cGGGUcCGaCGGUCACGCUuacCGCugCCg -3'
miRNA:   3'- -UCCAaGC-GUUAGUGCGGca-GCGugGG- -5'
8093 3' -55.1 NC_001978.2 + 16695 0.68 0.538346
Target:  5'- cGGUcaaCGCAuGUCgGCGCCGUucCGCuGCCCa -3'
miRNA:   3'- uCCAa--GCGU-UAG-UGCGGCA--GCG-UGGG- -5'
8093 3' -55.1 NC_001978.2 + 16991 0.71 0.369415
Target:  5'- uGGUUgGCAAgCACGUCGgaCGCugCCu -3'
miRNA:   3'- uCCAAgCGUUaGUGCGGCa-GCGugGG- -5'
8093 3' -55.1 NC_001978.2 + 17515 0.68 0.506185
Target:  5'- ----gCGCAGauaCACGCCGUCGC-CCUc -3'
miRNA:   3'- uccaaGCGUUa--GUGCGGCAGCGuGGG- -5'
8093 3' -55.1 NC_001978.2 + 17914 0.66 0.637978
Target:  5'- --cUUCGCccggCACGCCGUCaGCGUCCu -3'
miRNA:   3'- uccAAGCGuua-GUGCGGCAG-CGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 18351 0.69 0.495646
Target:  5'- aAGG-UCGUcacGUC-CGUCGUCGuCGCCCu -3'
miRNA:   3'- -UCCaAGCGu--UAGuGCGGCAGC-GUGGG- -5'
8093 3' -55.1 NC_001978.2 + 18900 0.68 0.506185
Target:  5'- cAGGcgcucCGCAgcGUCgauagcggggaACGCCGcgCGCACCCa -3'
miRNA:   3'- -UCCaa---GCGU--UAG-----------UGCGGCa-GCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 20776 0.68 0.560171
Target:  5'- cGGacCGCAaagaGUCccuUGCCGUCGCGUCCg -3'
miRNA:   3'- uCCaaGCGU----UAGu--GCGGCAGCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 21597 0.66 0.6268
Target:  5'- gGGGcUUCGU---CAUGCCGUCacaGCGCCg -3'
miRNA:   3'- -UCC-AAGCGuuaGUGCGGCAG---CGUGGg -5'
8093 3' -55.1 NC_001978.2 + 22738 0.68 0.526466
Target:  5'- cGGcgUCGUGuucGUCGCuGCCGUCGUcgggcucGCCCu -3'
miRNA:   3'- uCCa-AGCGU---UAGUG-CGGCAGCG-------UGGG- -5'
8093 3' -55.1 NC_001978.2 + 23582 0.66 0.671437
Target:  5'- cGGGUUCGg---CGCGUCGUacuccuucgcCGCugCCu -3'
miRNA:   3'- -UCCAAGCguuaGUGCGGCA----------GCGugGG- -5'
8093 3' -55.1 NC_001978.2 + 23846 0.66 0.6268
Target:  5'- ---gUCgGCAAUCGCGUCGUUGUACg- -3'
miRNA:   3'- uccaAG-CGUUAGUGCGGCAGCGUGgg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.