miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8093 5' -53.8 NC_001978.2 + 868 0.66 0.722868
Target:  5'- gUCGAGUgcuCCGGCG-CcUGGGCGCGcgAc -3'
miRNA:   3'- -AGCUCG---GGCUGCuGuAUUCGCGCuaU- -5'
8093 5' -53.8 NC_001978.2 + 30435 0.73 0.326833
Target:  5'- gCGAGCCgGGCGGCuucGGCGCGu-- -3'
miRNA:   3'- aGCUCGGgCUGCUGuauUCGCGCuau -5'
8093 5' -53.8 NC_001978.2 + 39423 0.7 0.488221
Target:  5'- aUCaAGCUCGAcCGGCcgGAGCGUGAUc -3'
miRNA:   3'- -AGcUCGGGCU-GCUGuaUUCGCGCUAu -5'
8093 5' -53.8 NC_001978.2 + 89 0.69 0.498887
Target:  5'- cUGGGUCCGGCGGCucaccuAGCGCGc-- -3'
miRNA:   3'- aGCUCGGGCUGCUGuau---UCGCGCuau -5'
8093 5' -53.8 NC_001978.2 + 40116 0.68 0.610002
Target:  5'- -aGAGCCCGACGAacac-GCGCu--- -3'
miRNA:   3'- agCUCGGGCUGCUguauuCGCGcuau -5'
8093 5' -53.8 NC_001978.2 + 35814 0.67 0.625933
Target:  5'- gUCGAGCUgGGCGACGgcguUGccaagggcuucgcauGGCGCGGc- -3'
miRNA:   3'- -AGCUCGGgCUGCUGU----AU---------------UCGCGCUau -5'
8093 5' -53.8 NC_001978.2 + 12928 1.07 0.001249
Target:  5'- aUCGAGCCCGACGACAUAAGCGCGAUAc -3'
miRNA:   3'- -AGCUCGGGCUGCUGUAUUCGCGCUAU- -5'
8093 5' -53.8 NC_001978.2 + 7989 0.73 0.318663
Target:  5'- cCGGGCUCGACGuACGUGAGCuuGAUu -3'
miRNA:   3'- aGCUCGGGCUGC-UGUAUUCGcgCUAu -5'
8093 5' -53.8 NC_001978.2 + 28352 0.72 0.361051
Target:  5'- gCGAGCCCGGCGcguuGCAUGuacGCGCa--- -3'
miRNA:   3'- aGCUCGGGCUGC----UGUAUu--CGCGcuau -5'
8093 5' -53.8 NC_001978.2 + 33808 0.68 0.553621
Target:  5'- gUCGAGCgacCCGACGACGgcAGauCGAUGa -3'
miRNA:   3'- -AGCUCG---GGCUGCUGUauUCgcGCUAU- -5'
8093 5' -53.8 NC_001978.2 + 8381 0.66 0.711813
Target:  5'- aCGAcGUCCGACuuacgGGCcauGGCGCGGUAa -3'
miRNA:   3'- aGCU-CGGGCUG-----CUGuauUCGCGCUAU- -5'
8093 5' -53.8 NC_001978.2 + 13724 0.76 0.191911
Target:  5'- gUCG-GCgCCGACcGCAUAGGCGCGAg- -3'
miRNA:   3'- -AGCuCG-GGCUGcUGUAUUCGCGCUau -5'
8093 5' -53.8 NC_001978.2 + 3540 0.67 0.655526
Target:  5'- gCGAGCCCGAUGgACucacGCGCa--- -3'
miRNA:   3'- aGCUCGGGCUGC-UGuauuCGCGcuau -5'
8093 5' -53.8 NC_001978.2 + 28221 0.7 0.456896
Target:  5'- gUCGAGCCCGGCGuaaagguuguACGUAgGGUGcCGAa- -3'
miRNA:   3'- -AGCUCGGGCUGC----------UGUAU-UCGC-GCUau -5'
8093 5' -53.8 NC_001978.2 + 22813 0.85 0.053113
Target:  5'- gCGAGCCCGACGACGgcAGCGaCGAa- -3'
miRNA:   3'- aGCUCGGGCUGCUGUauUCGC-GCUau -5'
8093 5' -53.8 NC_001978.2 + 25479 0.67 0.632765
Target:  5'- gUCGAGCCCGaaccggucgGCGGCGUAgucGGCgGCa--- -3'
miRNA:   3'- -AGCUCGGGC---------UGCUGUAU---UCG-CGcuau -5'
8093 5' -53.8 NC_001978.2 + 32319 0.66 0.722868
Target:  5'- gUCGuGaCCCGGuCGACGUuGAGCGCu--- -3'
miRNA:   3'- -AGCuC-GGGCU-GCUGUA-UUCGCGcuau -5'
8093 5' -53.8 NC_001978.2 + 29008 0.68 0.610002
Target:  5'- aCGAuuGCCCGACaGACcgGAGCGacCGAa- -3'
miRNA:   3'- aGCU--CGGGCUG-CUGuaUUCGC--GCUau -5'
8093 5' -53.8 NC_001978.2 + 36797 0.68 0.598646
Target:  5'- -gGAGCCugccgaCGACGACGUuccGGCGCGu-- -3'
miRNA:   3'- agCUCGG------GCUGCUGUAu--UCGCGCuau -5'
8093 5' -53.8 NC_001978.2 + 15856 0.68 0.58732
Target:  5'- gUCGAcUCCGGCGACGUGuaccaaCGCGGUGc -3'
miRNA:   3'- -AGCUcGGGCUGCUGUAUuc----GCGCUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.