miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8097 3' -57.1 NC_001978.2 + 14845 1.1 0.00036
Target:  5'- uAGUGCCGCGCCAACGCCAAUGACCGCc -3'
miRNA:   3'- -UCACGGCGCGGUUGCGGUUACUGGCG- -5'
8097 3' -57.1 NC_001978.2 + 33557 0.77 0.097597
Target:  5'- gGGUGUCGCccuuGUCGGCGCCG-UGACCGUc -3'
miRNA:   3'- -UCACGGCG----CGGUUGCGGUuACUGGCG- -5'
8097 3' -57.1 NC_001978.2 + 13739 0.74 0.170921
Target:  5'- cGUGCCGUugccguuGUCGGCGCC---GACCGCa -3'
miRNA:   3'- uCACGGCG-------CGGUUGCGGuuaCUGGCG- -5'
8097 3' -57.1 NC_001978.2 + 13438 0.74 0.181046
Target:  5'- aAGUGuCCGUGCCAAUGCC----GCCGUc -3'
miRNA:   3'- -UCAC-GGCGCGGUUGCGGuuacUGGCG- -5'
8097 3' -57.1 NC_001978.2 + 15477 0.73 0.205095
Target:  5'- aGGUGCgCGCGCCAacgACGCCGGUcagauucuccuuaACCGUg -3'
miRNA:   3'- -UCACG-GCGCGGU---UGCGGUUAc------------UGGCG- -5'
8097 3' -57.1 NC_001978.2 + 2652 0.72 0.218709
Target:  5'- uGUGCCGaC-CCAACGCCGGguuGCCGUc -3'
miRNA:   3'- uCACGGC-GcGGUUGCGGUUac-UGGCG- -5'
8097 3' -57.1 NC_001978.2 + 35647 0.72 0.230638
Target:  5'- --gGUCGCGCCGACGCuCAggGgcGCCGUc -3'
miRNA:   3'- ucaCGGCGCGGUUGCG-GUuaC--UGGCG- -5'
8097 3' -57.1 NC_001978.2 + 17167 0.72 0.236806
Target:  5'- -cUGCCGUGCCGGgGCUugAGUGGUCGCa -3'
miRNA:   3'- ucACGGCGCGGUUgCGG--UUACUGGCG- -5'
8097 3' -57.1 NC_001978.2 + 35919 0.71 0.249555
Target:  5'- --aGCCGaCGCUAGaCGCCcuUGAUCGCu -3'
miRNA:   3'- ucaCGGC-GCGGUU-GCGGuuACUGGCG- -5'
8097 3' -57.1 NC_001978.2 + 38220 0.71 0.25614
Target:  5'- --aGCCGCGCCAcgccuucgggACGUCAGcGGCuCGCc -3'
miRNA:   3'- ucaCGGCGCGGU----------UGCGGUUaCUG-GCG- -5'
8097 3' -57.1 NC_001978.2 + 34497 0.71 0.265597
Target:  5'- --cGCCGCGCCccgcuugaggacgaaAGCGCCcuuauGUGGCuCGCc -3'
miRNA:   3'- ucaCGGCGCGG---------------UUGCGGu----UACUG-GCG- -5'
8097 3' -57.1 NC_001978.2 + 11370 0.71 0.269736
Target:  5'- --gGUCGCGCCcguauaccucaAGCGUCAgcGUGACCGUc -3'
miRNA:   3'- ucaCGGCGCGG-----------UUGCGGU--UACUGGCG- -5'
8097 3' -57.1 NC_001978.2 + 7074 0.7 0.291211
Target:  5'- gAGUGCCGUacgugucuucccGcCCGAUGCCAAUGcUUGCg -3'
miRNA:   3'- -UCACGGCG------------C-GGUUGCGGUUACuGGCG- -5'
8097 3' -57.1 NC_001978.2 + 5879 0.7 0.298661
Target:  5'- aGGUGUCcgggGCGCCGACGgUAAgagcgGACUGCc -3'
miRNA:   3'- -UCACGG----CGCGGUUGCgGUUa----CUGGCG- -5'
8097 3' -57.1 NC_001978.2 + 12328 0.7 0.32993
Target:  5'- cGU-CCGCuGCCGACGUCGucaGCCGCg -3'
miRNA:   3'- uCAcGGCG-CGGUUGCGGUuacUGGCG- -5'
8097 3' -57.1 NC_001978.2 + 3821 0.69 0.346447
Target:  5'- aGGUGCgGCGgC-ACGCCAAaGAuUCGCg -3'
miRNA:   3'- -UCACGgCGCgGuUGCGGUUaCU-GGCG- -5'
8097 3' -57.1 NC_001978.2 + 1381 0.69 0.346447
Target:  5'- --cGUCGCGUCAGCGggAAUGuGCCGCg -3'
miRNA:   3'- ucaCGGCGCGGUUGCggUUAC-UGGCG- -5'
8097 3' -57.1 NC_001978.2 + 14226 0.69 0.372316
Target:  5'- -aUGCCGCGCCcgauaGCCGAccacucGACCGg -3'
miRNA:   3'- ucACGGCGCGGuug--CGGUUa-----CUGGCg -5'
8097 3' -57.1 NC_001978.2 + 35728 0.69 0.381226
Target:  5'- -cUGCCGCGCCAugcgaaGCCcuUGGCaaCGCc -3'
miRNA:   3'- ucACGGCGCGGUug----CGGuuACUG--GCG- -5'
8097 3' -57.1 NC_001978.2 + 23440 0.69 0.381226
Target:  5'- cGUGUCGCacGCCGACGaagaGAUGAUCGg -3'
miRNA:   3'- uCACGGCG--CGGUUGCgg--UUACUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.