miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8097 3' -57.1 NC_001978.2 + 32301 0.67 0.477686
Target:  5'- --cGCCGUGCCuacugagccgaaGGCGCCAcgcaaGACgGCg -3'
miRNA:   3'- ucaCGGCGCGG------------UUGCGGUua---CUGgCG- -5'
8097 3' -57.1 NC_001978.2 + 8310 0.68 0.419211
Target:  5'- ---aCCGCGCCAugGCCcguaagucggacgucGUGGCgGCa -3'
miRNA:   3'- ucacGGCGCGGUugCGGu--------------UACUGgCG- -5'
8097 3' -57.1 NC_001978.2 + 1754 0.68 0.427852
Target:  5'- cGUGUCG-GCgGACGCCg--GACgGCa -3'
miRNA:   3'- uCACGGCgCGgUUGCGGuuaCUGgCG- -5'
8097 3' -57.1 NC_001978.2 + 25385 0.67 0.444457
Target:  5'- -cUGCCGCucacccaggaugccGCCGacuACGCCGccGACCGg -3'
miRNA:   3'- ucACGGCG--------------CGGU---UGCGGUuaCUGGCg -5'
8097 3' -57.1 NC_001978.2 + 10747 0.67 0.447424
Target:  5'- cGUGCCGCGaagGGCGCUAucaacggcGUGAUCGa -3'
miRNA:   3'- uCACGGCGCgg-UUGCGGU--------UACUGGCg -5'
8097 3' -57.1 NC_001978.2 + 28501 0.67 0.447424
Target:  5'- cGUGuuGCuGCCGcuUGCCGAccuUGACCGg -3'
miRNA:   3'- uCACggCG-CGGUu-GCGGUU---ACUGGCg -5'
8097 3' -57.1 NC_001978.2 + 30737 0.67 0.447424
Target:  5'- --cGCCGUGUCGACGUC---GACCGa -3'
miRNA:   3'- ucaCGGCGCGGUUGCGGuuaCUGGCg -5'
8097 3' -57.1 NC_001978.2 + 12756 0.67 0.467484
Target:  5'- uGGUGUaCGUGgCGACGCUGccGACCGg -3'
miRNA:   3'- -UCACG-GCGCgGUUGCGGUuaCUGGCg -5'
8097 3' -57.1 NC_001978.2 + 10259 0.67 0.471552
Target:  5'- gGGUGCUuauggGCGCUcaguccaugauucagGGCGCCcgAAUGGCgGCg -3'
miRNA:   3'- -UCACGG-----CGCGG---------------UUGCGG--UUACUGgCG- -5'
8097 3' -57.1 NC_001978.2 + 39799 0.68 0.412564
Target:  5'- --cGCCGaCGCCcugAACGCCcuugaagagcuguacGAaGACCGCg -3'
miRNA:   3'- ucaCGGC-GCGG---UUGCGG---------------UUaCUGGCG- -5'
8097 3' -57.1 NC_001978.2 + 25149 0.68 0.408795
Target:  5'- --cGCUGUGcCCGGCGCaCAGUGAuucCCGUc -3'
miRNA:   3'- ucaCGGCGC-GGUUGCG-GUUACU---GGCG- -5'
8097 3' -57.1 NC_001978.2 + 34633 0.68 0.399467
Target:  5'- -uUGCCGgguucgaGCCGACGCCGAcUGAgccCCGUu -3'
miRNA:   3'- ucACGGCg------CGGUUGCGGUU-ACU---GGCG- -5'
8097 3' -57.1 NC_001978.2 + 17167 0.72 0.236806
Target:  5'- -cUGCCGUGCCGGgGCUugAGUGGUCGCa -3'
miRNA:   3'- ucACGGCGCGGUUgCGG--UUACUGGCG- -5'
8097 3' -57.1 NC_001978.2 + 35919 0.71 0.249555
Target:  5'- --aGCCGaCGCUAGaCGCCcuUGAUCGCu -3'
miRNA:   3'- ucaCGGC-GCGGUU-GCGGuuACUGGCG- -5'
8097 3' -57.1 NC_001978.2 + 34497 0.71 0.265597
Target:  5'- --cGCCGCGCCccgcuugaggacgaaAGCGCCcuuauGUGGCuCGCc -3'
miRNA:   3'- ucaCGGCGCGG---------------UUGCGGu----UACUG-GCG- -5'
8097 3' -57.1 NC_001978.2 + 16108 0.69 0.381226
Target:  5'- -uUGCCGCuGCCGACGUCGGggcGAuucCCGUu -3'
miRNA:   3'- ucACGGCG-CGGUUGCGGUUa--CU---GGCG- -5'
8097 3' -57.1 NC_001978.2 + 23440 0.69 0.381226
Target:  5'- cGUGUCGCacGCCGACGaagaGAUGAUCGg -3'
miRNA:   3'- uCACGGCG--CGGUUGCgg--UUACUGGCg -5'
8097 3' -57.1 NC_001978.2 + 35728 0.69 0.381226
Target:  5'- -cUGCCGCGCCAugcgaaGCCcuUGGCaaCGCc -3'
miRNA:   3'- ucACGGCGCGGUug----CGGuuACUG--GCG- -5'
8097 3' -57.1 NC_001978.2 + 3618 0.68 0.399467
Target:  5'- cGUGCCGCuaacuCCGGCGUCGAcaacgcgcACCGCg -3'
miRNA:   3'- uCACGGCGc----GGUUGCGGUUac------UGGCG- -5'
8097 3' -57.1 NC_001978.2 + 29385 0.68 0.399467
Target:  5'- cGUGCCcgucguCGCCGACGCUGAccuagggGGCCGg -3'
miRNA:   3'- uCACGGc-----GCGGUUGCGGUUa------CUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.