miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8097 3' -57.1 NC_001978.2 + 1056 0.66 0.551831
Target:  5'- gGGUcGUCGCccccGCCGAgacuccCGCCGAgaagcgcGACCGCa -3'
miRNA:   3'- -UCA-CGGCG----CGGUU------GCGGUUa------CUGGCG- -5'
8097 3' -57.1 NC_001978.2 + 1381 0.69 0.346447
Target:  5'- --cGUCGCGUCAGCGggAAUGuGCCGCg -3'
miRNA:   3'- ucaCGGCGCGGUUGCggUUAC-UGGCG- -5'
8097 3' -57.1 NC_001978.2 + 1754 0.68 0.427852
Target:  5'- cGUGUCG-GCgGACGCCg--GACgGCa -3'
miRNA:   3'- uCACGGCgCGgUUGCGGuuaCUGgCG- -5'
8097 3' -57.1 NC_001978.2 + 2652 0.72 0.218709
Target:  5'- uGUGCCGaC-CCAACGCCGGguuGCCGUc -3'
miRNA:   3'- uCACGGC-GcGGUUGCGGUUac-UGGCG- -5'
8097 3' -57.1 NC_001978.2 + 3618 0.68 0.399467
Target:  5'- cGUGCCGCuaacuCCGGCGUCGAcaacgcgcACCGCg -3'
miRNA:   3'- uCACGGCGc----GGUUGCGGUUac------UGGCG- -5'
8097 3' -57.1 NC_001978.2 + 3821 0.69 0.346447
Target:  5'- aGGUGCgGCGgC-ACGCCAAaGAuUCGCg -3'
miRNA:   3'- -UCACGgCGCgGuUGCGGUUaCU-GGCG- -5'
8097 3' -57.1 NC_001978.2 + 5375 0.68 0.399467
Target:  5'- cGUGaaggucgaCGCGCCAcCGCgcAUGAUCGCg -3'
miRNA:   3'- uCACg-------GCGCGGUuGCGguUACUGGCG- -5'
8097 3' -57.1 NC_001978.2 + 5879 0.7 0.298661
Target:  5'- aGGUGUCcgggGCGCCGACGgUAAgagcgGACUGCc -3'
miRNA:   3'- -UCACGG----CGCGGUUGCgGUUa----CUGGCG- -5'
8097 3' -57.1 NC_001978.2 + 7074 0.7 0.291211
Target:  5'- gAGUGCCGUacgugucuucccGcCCGAUGCCAAUGcUUGCg -3'
miRNA:   3'- -UCACGGCG------------C-GGUUGCGGUUACuGGCG- -5'
8097 3' -57.1 NC_001978.2 + 8310 0.68 0.419211
Target:  5'- ---aCCGCGCCAugGCCcguaagucggacgucGUGGCgGCa -3'
miRNA:   3'- ucacGGCGCGGUugCGGu--------------UACUGgCG- -5'
8097 3' -57.1 NC_001978.2 + 8542 0.66 0.508924
Target:  5'- cGUGCCccgaugcuucGCGCCAugGCguAUG-UCGUc -3'
miRNA:   3'- uCACGG----------CGCGGUugCGguUACuGGCG- -5'
8097 3' -57.1 NC_001978.2 + 9090 0.66 0.551831
Target:  5'- aAGcGCCucaGCGauaCCGGCGCCAAUG-CCGa -3'
miRNA:   3'- -UCaCGG---CGC---GGUUGCGGUUACuGGCg -5'
8097 3' -57.1 NC_001978.2 + 9292 0.66 0.519529
Target:  5'- --aGuuGgGCCGACGUCGAauGCCGUu -3'
miRNA:   3'- ucaCggCgCGGUUGCGGUUacUGGCG- -5'
8097 3' -57.1 NC_001978.2 + 10259 0.67 0.471552
Target:  5'- gGGUGCUuauggGCGCUcaguccaugauucagGGCGCCcgAAUGGCgGCg -3'
miRNA:   3'- -UCACGG-----CGCGG---------------UUGCGG--UUACUGgCG- -5'
8097 3' -57.1 NC_001978.2 + 10747 0.67 0.447424
Target:  5'- cGUGCCGCGaagGGCGCUAucaacggcGUGAUCGa -3'
miRNA:   3'- uCACGGCGCgg-UUGCGGU--------UACUGGCg -5'
8097 3' -57.1 NC_001978.2 + 11370 0.71 0.269736
Target:  5'- --gGUCGCGCCcguauaccucaAGCGUCAgcGUGACCGUc -3'
miRNA:   3'- ucaCGGCGCGG-----------UUGCGGU--UACUGGCG- -5'
8097 3' -57.1 NC_001978.2 + 11518 0.66 0.530219
Target:  5'- --aGCgGCGCCGAcCGCUugcGUGcCCGUg -3'
miRNA:   3'- ucaCGgCGCGGUU-GCGGu--UACuGGCG- -5'
8097 3' -57.1 NC_001978.2 + 12192 0.67 0.477686
Target:  5'- cGUGCCGgaGCCGAcCGCaaccGugCGCg -3'
miRNA:   3'- uCACGGCg-CGGUU-GCGguuaCugGCG- -5'
8097 3' -57.1 NC_001978.2 + 12328 0.7 0.32993
Target:  5'- cGU-CCGCuGCCGACGUCGucaGCCGCg -3'
miRNA:   3'- uCAcGGCG-CGGUUGCGGUuacUGGCG- -5'
8097 3' -57.1 NC_001978.2 + 12756 0.67 0.467484
Target:  5'- uGGUGUaCGUGgCGACGCUGccGACCGg -3'
miRNA:   3'- -UCACG-GCGCgGUUGCGGUuaCUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.