miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8100 3' -56.2 NC_001978.2 + 30934 0.67 0.540623
Target:  5'- uGCCGAAGGAgUGCUUGAgaaugucGCGCUGAgUGg -3'
miRNA:   3'- -CGGCUUCUU-GUGGACU-------CGCGGCUgGC- -5'
8100 3' -56.2 NC_001978.2 + 12793 0.67 0.530969
Target:  5'- cCCGAcucAGAACACCUaugGGGCGUCGGg-- -3'
miRNA:   3'- cGGCU---UCUUGUGGA---CUCGCGGCUggc -5'
8100 3' -56.2 NC_001978.2 + 13752 0.67 0.530969
Target:  5'- uGCCGAcaAGCuucgugccguuGCCguugucGGCGCCGACCGc -3'
miRNA:   3'- -CGGCUucUUG-----------UGGac----UCGCGGCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 37111 0.67 0.520318
Target:  5'- aCCGucuuAC-CCUGGGCGCCauggGACCGa -3'
miRNA:   3'- cGGCuucuUGuGGACUCGCGG----CUGGC- -5'
8100 3' -56.2 NC_001978.2 + 5347 0.67 0.509751
Target:  5'- aUCGcGGAACgcucgacaGCCUGAGCgaugaGCUGACCGu -3'
miRNA:   3'- cGGCuUCUUG--------UGGACUCG-----CGGCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 23320 0.67 0.508699
Target:  5'- cGCCGAAGAGCugaGCCacAGCGuCCGcaacggacuguucGCCGg -3'
miRNA:   3'- -CGGCUUCUUG---UGGacUCGC-GGC-------------UGGC- -5'
8100 3' -56.2 NC_001978.2 + 24004 0.68 0.499275
Target:  5'- uGCCGuAGGAAUGCCgaAGCGUCGAgCa -3'
miRNA:   3'- -CGGC-UUCUUGUGGacUCGCGGCUgGc -5'
8100 3' -56.2 NC_001978.2 + 40818 0.68 0.488896
Target:  5'- aGCCGGGcGACACgCUGAGCGaacaCGuCUGg -3'
miRNA:   3'- -CGGCUUcUUGUG-GACUCGCg---GCuGGC- -5'
8100 3' -56.2 NC_001978.2 + 36989 0.68 0.485802
Target:  5'- aGCUGGGcGAACuuCUuccgcacgguggcaGGGUGCCGACCGg -3'
miRNA:   3'- -CGGCUU-CUUGugGA--------------CUCGCGGCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 12591 0.68 0.478619
Target:  5'- uGCCGGAGucguACAgCgUGAa-GCCGACCGg -3'
miRNA:   3'- -CGGCUUCu---UGU-GgACUcgCGGCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 35978 0.68 0.46845
Target:  5'- aGCCuGggGcGACACCccgGAGacugcCGCCGACCc -3'
miRNA:   3'- -CGG-CuuC-UUGUGGa--CUC-----GCGGCUGGc -5'
8100 3' -56.2 NC_001978.2 + 21286 0.68 0.46845
Target:  5'- gGCCGAcGAAgAC--GAGUGaCCGACCGa -3'
miRNA:   3'- -CGGCUuCUUgUGgaCUCGC-GGCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 37286 0.68 0.462401
Target:  5'- aGCCGAAG-GCAuCCUugaaguccaucaacgGAGUGCCuACCGg -3'
miRNA:   3'- -CGGCUUCuUGU-GGA---------------CUCGCGGcUGGC- -5'
8100 3' -56.2 NC_001978.2 + 23115 0.68 0.458392
Target:  5'- aGCCGAAGAA-GCgUGAGacguaCGCCGACg- -3'
miRNA:   3'- -CGGCUUCUUgUGgACUC-----GCGGCUGgc -5'
8100 3' -56.2 NC_001978.2 + 35742 0.68 0.458392
Target:  5'- uCCGuacGGGGCuuC-GAGUGCCGACCGg -3'
miRNA:   3'- cGGCu--UCUUGugGaCUCGCGGCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 25625 0.69 0.448451
Target:  5'- aGCCuGAAGAACccggacgggcaGCgCUGGGCGCCGuauggcguguuCCGg -3'
miRNA:   3'- -CGG-CUUCUUG-----------UG-GACUCGCGGCu----------GGC- -5'
8100 3' -56.2 NC_001978.2 + 36815 0.69 0.438631
Target:  5'- uCCgGAAGGACGuCCUGAacggccugggGCGCCGucuCCGg -3'
miRNA:   3'- cGG-CUUCUUGU-GGACU----------CGCGGCu--GGC- -5'
8100 3' -56.2 NC_001978.2 + 36775 0.69 0.428934
Target:  5'- aGCCGAcgccGGA--GCCUGAGCcggaGCCuGCCGa -3'
miRNA:   3'- -CGGCU----UCUugUGGACUCG----CGGcUGGC- -5'
8100 3' -56.2 NC_001978.2 + 26067 0.69 0.409927
Target:  5'- gGCCGAAGucgcGCACCguaccGGCGCCGuuCa -3'
miRNA:   3'- -CGGCUUCu---UGUGGac---UCGCGGCugGc -5'
8100 3' -56.2 NC_001978.2 + 7345 0.69 0.409927
Target:  5'- gGCuCGAAGGucgccuucaaGCACCUGGguuGCGUggCGACCGa -3'
miRNA:   3'- -CG-GCUUCU----------UGUGGACU---CGCG--GCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.