miRNA display CGI


Results 21 - 40 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8100 3' -56.2 NC_001978.2 + 14237 0.66 0.629437
Target:  5'- uGCCGGAcaccaugccGCGCCcGAuaGCCGACCa -3'
miRNA:   3'- -CGGCUUcu-------UGUGGaCUcgCGGCUGGc -5'
8100 3' -56.2 NC_001978.2 + 15449 0.77 0.142297
Target:  5'- uGCCGAAGGACACgCUGAacaacucCGUCGACCu -3'
miRNA:   3'- -CGGCUUCUUGUG-GACUc------GCGGCUGGc -5'
8100 3' -56.2 NC_001978.2 + 15677 0.76 0.158983
Target:  5'- aGCCGuuGAACGCgUGAGCGCCccGCCc -3'
miRNA:   3'- -CGGCuuCUUGUGgACUCGCGGc-UGGc -5'
8100 3' -56.2 NC_001978.2 + 15994 0.73 0.231966
Target:  5'- gGCCGGAGggU-CCgGAGgGuCCGGCCGg -3'
miRNA:   3'- -CGGCUUCuuGuGGaCUCgC-GGCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 17399 1.1 0.000567
Target:  5'- uGCCGAAGAACACCUGAGCGCCGACCGc -3'
miRNA:   3'- -CGGCUUCUUGUGGACUCGCGGCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 17769 0.72 0.278082
Target:  5'- aCCGAccuGGGugACCUGGGCGCCacguGCCc -3'
miRNA:   3'- cGGCU---UCUugUGGACUCGCGGc---UGGc -5'
8100 3' -56.2 NC_001978.2 + 18163 0.7 0.356172
Target:  5'- cCCGAAGG---UCUGAGCGUCGAUCa -3'
miRNA:   3'- cGGCUUCUuguGGACUCGCGGCUGGc -5'
8100 3' -56.2 NC_001978.2 + 18845 0.75 0.187327
Target:  5'- cGCUGcGGAGCGCCUGAGC-CUGcCCGu -3'
miRNA:   3'- -CGGCuUCUUGUGGACUCGcGGCuGGC- -5'
8100 3' -56.2 NC_001978.2 + 19424 0.7 0.37353
Target:  5'- aGCgCGAAGAGCGCCUGAaccgugacccgcGCGgUGACg- -3'
miRNA:   3'- -CG-GCUUCUUGUGGACU------------CGCgGCUGgc -5'
8100 3' -56.2 NC_001978.2 + 19510 0.71 0.339389
Target:  5'- gGCCGGacguucgacacGGAGCugACC--GGCGCCGACCa -3'
miRNA:   3'- -CGGCU-----------UCUUG--UGGacUCGCGGCUGGc -5'
8100 3' -56.2 NC_001978.2 + 19999 0.67 0.563364
Target:  5'- aGCCGGAacuuGAgcuguGCGCCgGGugcucgaaggucGUGCCGACCGg -3'
miRNA:   3'- -CGGCUU----CU-----UGUGGaCU------------CGCGGCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 21286 0.68 0.46845
Target:  5'- gGCCGAcGAAgAC--GAGUGaCCGACCGa -3'
miRNA:   3'- -CGGCUuCUUgUGgaCUCGC-GGCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 21524 0.77 0.142297
Target:  5'- cGCUGAGGcuguacgcGACGCCUGAGCGcCCGucuCCGc -3'
miRNA:   3'- -CGGCUUC--------UUGUGGACUCGC-GGCu--GGC- -5'
8100 3' -56.2 NC_001978.2 + 22055 0.67 0.563364
Target:  5'- cGCCGAccuGGGCAgCgaAGCGCaCGACCu -3'
miRNA:   3'- -CGGCUu--CUUGUgGacUCGCG-GCUGGc -5'
8100 3' -56.2 NC_001978.2 + 23115 0.68 0.458392
Target:  5'- aGCCGAAGAA-GCgUGAGacguaCGCCGACg- -3'
miRNA:   3'- -CGGCUUCUUgUGgACUC-----GCGGCUGgc -5'
8100 3' -56.2 NC_001978.2 + 23320 0.67 0.508699
Target:  5'- cGCCGAAGAGCugaGCCacAGCGuCCGcaacggacuguucGCCGg -3'
miRNA:   3'- -CGGCUUCUUG---UGGacUCGC-GGC-------------UGGC- -5'
8100 3' -56.2 NC_001978.2 + 23638 0.66 0.607303
Target:  5'- aGCCGAAGAcgACgUUGAGCGCguCGGCa- -3'
miRNA:   3'- -CGGCUUCUugUG-GACUCGCG--GCUGgc -5'
8100 3' -56.2 NC_001978.2 + 23715 0.66 0.600676
Target:  5'- cGCCGAagcguggcccgaugcGGAACaaGCUugUGAGCuacuacaaGCCGACCa -3'
miRNA:   3'- -CGGCU---------------UCUUG--UGG--ACUCG--------CGGCUGGc -5'
8100 3' -56.2 NC_001978.2 + 24004 0.68 0.499275
Target:  5'- uGCCGuAGGAAUGCCgaAGCGUCGAgCa -3'
miRNA:   3'- -CGGC-UUCUUGUGGacUCGCGGCUgGc -5'
8100 3' -56.2 NC_001978.2 + 24897 0.66 0.585254
Target:  5'- cCCGcuGAGCAagggGGGCGCCGACg- -3'
miRNA:   3'- cGGCuuCUUGUgga-CUCGCGGCUGgc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.