miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8100 3' -56.2 NC_001978.2 + 103 0.73 0.244445
Target:  5'- gGCCuGggGGGCGCCUGGGU-CCGGCgGc -3'
miRNA:   3'- -CGG-CuuCUUGUGGACUCGcGGCUGgC- -5'
8100 3' -56.2 NC_001978.2 + 813 0.75 0.192984
Target:  5'- cGCCGGAGcacucgacccauucgGACACCUGGuauucgucgcugacGCGCUGACCc -3'
miRNA:   3'- -CGGCUUC---------------UUGUGGACU--------------CGCGGCUGGc -5'
8100 3' -56.2 NC_001978.2 + 869 0.76 0.163423
Target:  5'- gGUCGAGugcuccGGCGCCUGGGCGCgCGACUGg -3'
miRNA:   3'- -CGGCUUc-----UUGUGGACUCGCG-GCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 1556 0.69 0.400622
Target:  5'- cGCCGc-GAucaugcuuuacCACCUGAuaGCCGACCGg -3'
miRNA:   3'- -CGGCuuCUu----------GUGGACUcgCGGCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 2978 0.7 0.382421
Target:  5'- uGCCGucGAGCGCUgggGAGUGCCcccGCCc -3'
miRNA:   3'- -CGGCuuCUUGUGGa--CUCGCGGc--UGGc -5'
8100 3' -56.2 NC_001978.2 + 3105 0.66 0.571004
Target:  5'- aGCCGGAccGAcgcgaacacugccgACACCUGaAGCGCgucaugcggagUGACCGu -3'
miRNA:   3'- -CGGCUU--CU--------------UGUGGAC-UCGCG-----------GCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 4114 0.66 0.596263
Target:  5'- cGgCGAAGAGCcggaGCCUGAGCcuGCCc-CCGc -3'
miRNA:   3'- -CgGCUUCUUG----UGGACUCG--CGGcuGGC- -5'
8100 3' -56.2 NC_001978.2 + 5187 0.72 0.264203
Target:  5'- gGUCGGcGGAACG-CUGAGCGCCGGagcCCGa -3'
miRNA:   3'- -CGGCU-UCUUGUgGACUCGCGGCU---GGC- -5'
8100 3' -56.2 NC_001978.2 + 5347 0.67 0.509751
Target:  5'- aUCGcGGAACgcucgacaGCCUGAGCgaugaGCUGACCGu -3'
miRNA:   3'- cGGCuUCUUG--------UGGACUCG-----CGGCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 5885 0.69 0.409927
Target:  5'- cGuuGAAGGuguCCgGGGCGCCGACgGu -3'
miRNA:   3'- -CggCUUCUuguGGaCUCGCGGCUGgC- -5'
8100 3' -56.2 NC_001978.2 + 7345 0.69 0.409927
Target:  5'- gGCuCGAAGGucgccuucaaGCACCUGGguuGCGUggCGACCGa -3'
miRNA:   3'- -CG-GCUUCU----------UGUGGACU---CGCG--GCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 8816 0.71 0.336922
Target:  5'- cGCCGGucgggggcgaagcgGGGGCA-CUGAGCGCCGcacGCCc -3'
miRNA:   3'- -CGGCU--------------UCUUGUgGACUCGCGGC---UGGc -5'
8100 3' -56.2 NC_001978.2 + 9100 0.74 0.208619
Target:  5'- gGCUGAGGcuaAGCGCCUGGGUgaaGCCG-CCGg -3'
miRNA:   3'- -CGGCUUC---UUGUGGACUCG---CGGCuGGC- -5'
8100 3' -56.2 NC_001978.2 + 10854 0.66 0.618364
Target:  5'- uCCGAAGAuucGCGCCaUGGGUG--GACCGg -3'
miRNA:   3'- cGGCUUCU---UGUGG-ACUCGCggCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 11026 0.71 0.339389
Target:  5'- gGCgCGAAGu-CGCCUGGGCGCUGcggacgucuCCGg -3'
miRNA:   3'- -CG-GCUUCuuGUGGACUCGCGGCu--------GGC- -5'
8100 3' -56.2 NC_001978.2 + 12169 0.66 0.607303
Target:  5'- gGCUGggGGcgGCACgUGGGCaugGUCGAgCGg -3'
miRNA:   3'- -CGGCuuCU--UGUGgACUCG---CGGCUgGC- -5'
8100 3' -56.2 NC_001978.2 + 12591 0.68 0.478619
Target:  5'- uGCCGGAGucguACAgCgUGAa-GCCGACCGg -3'
miRNA:   3'- -CGGCUUCu---UGU-GgACUcgCGGCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 12793 0.67 0.530969
Target:  5'- cCCGAcucAGAACACCUaugGGGCGUCGGg-- -3'
miRNA:   3'- cGGCU---UCUUGUGGA---CUCGCGGCUggc -5'
8100 3' -56.2 NC_001978.2 + 13138 0.66 0.596263
Target:  5'- uGCCGAccccGACacgcuucaGCCUGGGCGuuCCGGCCu -3'
miRNA:   3'- -CGGCUuc--UUG--------UGGACUCGC--GGCUGGc -5'
8100 3' -56.2 NC_001978.2 + 13752 0.67 0.530969
Target:  5'- uGCCGAcaAGCuucgugccguuGCCguugucGGCGCCGACCGc -3'
miRNA:   3'- -CGGCUucUUG-----------UGGac----UCGCGGCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.