miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8100 3' -56.2 NC_001978.2 + 40818 0.68 0.488896
Target:  5'- aGCCGGGcGACACgCUGAGCGaacaCGuCUGg -3'
miRNA:   3'- -CGGCUUcUUGUG-GACUCGCg---GCuGGC- -5'
8100 3' -56.2 NC_001978.2 + 39988 0.66 0.585254
Target:  5'- cCCGAAG-ACGCC-GA-CGCUGACCc -3'
miRNA:   3'- cGGCUUCuUGUGGaCUcGCGGCUGGc -5'
8100 3' -56.2 NC_001978.2 + 38129 0.71 0.323188
Target:  5'- cGCCGAccgcGAACGCCauucGAGCGUC-ACCGg -3'
miRNA:   3'- -CGGCUu---CUUGUGGa---CUCGCGGcUGGC- -5'
8100 3' -56.2 NC_001978.2 + 37771 0.74 0.197723
Target:  5'- cGUCGAAGAuCACCcagGGGCGCaCGACgGg -3'
miRNA:   3'- -CGGCUUCUuGUGGa--CUCGCG-GCUGgC- -5'
8100 3' -56.2 NC_001978.2 + 37323 0.7 0.347708
Target:  5'- aGCUucgcGAGCACCUgacgGAGCGCCGuCCGc -3'
miRNA:   3'- -CGGcuu-CUUGUGGA----CUCGCGGCuGGC- -5'
8100 3' -56.2 NC_001978.2 + 37286 0.68 0.462401
Target:  5'- aGCCGAAG-GCAuCCUugaaguccaucaacgGAGUGCCuACCGg -3'
miRNA:   3'- -CGGCUUCuUGU-GGA---------------CUCGCGGcUGGC- -5'
8100 3' -56.2 NC_001978.2 + 37111 0.67 0.520318
Target:  5'- aCCGucuuAC-CCUGGGCGCCauggGACCGa -3'
miRNA:   3'- cGGCuucuUGuGGACUCGCGG----CUGGC- -5'
8100 3' -56.2 NC_001978.2 + 36989 0.68 0.485802
Target:  5'- aGCUGGGcGAACuuCUuccgcacgguggcaGGGUGCCGACCGg -3'
miRNA:   3'- -CGGCUU-CUUGugGA--------------CUCGCGGCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 36815 0.69 0.438631
Target:  5'- uCCgGAAGGACGuCCUGAacggccugggGCGCCGucuCCGg -3'
miRNA:   3'- cGG-CUUCUUGU-GGACU----------CGCGGCu--GGC- -5'
8100 3' -56.2 NC_001978.2 + 36775 0.69 0.428934
Target:  5'- aGCCGAcgccGGA--GCCUGAGCcggaGCCuGCCGa -3'
miRNA:   3'- -CGGCU----UCUugUGGACUCG----CGGcUGGC- -5'
8100 3' -56.2 NC_001978.2 + 36647 0.73 0.238137
Target:  5'- uGCCGAcgcuGAGCGggaagcCCUGAGCGCCccugaGCCGg -3'
miRNA:   3'- -CGGCUu---CUUGU------GGACUCGCGGc----UGGC- -5'
8100 3' -56.2 NC_001978.2 + 36092 0.71 0.339389
Target:  5'- cGCCGA----CACCUGGGCGCgCGaggaaGCCGa -3'
miRNA:   3'- -CGGCUucuuGUGGACUCGCG-GC-----UGGC- -5'
8100 3' -56.2 NC_001978.2 + 35978 0.68 0.46845
Target:  5'- aGCCuGggGcGACACCccgGAGacugcCGCCGACCc -3'
miRNA:   3'- -CGG-CuuC-UUGUGGa--CUC-----GCGGCUGGc -5'
8100 3' -56.2 NC_001978.2 + 35808 0.85 0.035426
Target:  5'- cGCCGAAGAcgacgGCaagguucuugacgACCUGGGCGCCGACCu -3'
miRNA:   3'- -CGGCUUCU-----UG-------------UGGACUCGCGGCUGGc -5'
8100 3' -56.2 NC_001978.2 + 35742 0.68 0.458392
Target:  5'- uCCGuacGGGGCuuC-GAGUGCCGACCGg -3'
miRNA:   3'- cGGCu--UCUUGugGaCUCGCGGCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 35659 0.67 0.549253
Target:  5'- cCCGggGucuucggucgcgccGACGCUcagGGGCGCCGucuCCGg -3'
miRNA:   3'- cGGCuuC--------------UUGUGGa--CUCGCGGCu--GGC- -5'
8100 3' -56.2 NC_001978.2 + 35573 0.82 0.056886
Target:  5'- aGCCGGAGAcgGCGCCccUGAGCGUCGGCgCGa -3'
miRNA:   3'- -CGGCUUCU--UGUGG--ACUCGCGGCUG-GC- -5'
8100 3' -56.2 NC_001978.2 + 35215 0.67 0.5525
Target:  5'- cGCCgGAAGGACAC--GGGCGCCaugguuGCCGc -3'
miRNA:   3'- -CGG-CUUCUUGUGgaCUCGCGGc-----UGGC- -5'
8100 3' -56.2 NC_001978.2 + 34150 0.72 0.29998
Target:  5'- cGCCGGAGcgugcccacgugGGCAaCUGAGCGCCG-UCGa -3'
miRNA:   3'- -CGGCUUC------------UUGUgGACUCGCGGCuGGC- -5'
8100 3' -56.2 NC_001978.2 + 33847 0.75 0.172637
Target:  5'- gGCCGAcGGcguUACCcGGGUGCCGACCGu -3'
miRNA:   3'- -CGGCUuCUu--GUGGaCUCGCGGCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.