miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8100 3' -56.2 NC_001978.2 + 19424 0.7 0.37353
Target:  5'- aGCgCGAAGAGCGCCUGAaccgugacccgcGCGgUGACg- -3'
miRNA:   3'- -CG-GCUUCUUGUGGACU------------CGCgGCUGgc -5'
8100 3' -56.2 NC_001978.2 + 34150 0.72 0.29998
Target:  5'- cGCCGGAGcgugcccacgugGGCAaCUGAGCGCCG-UCGa -3'
miRNA:   3'- -CGGCUUC------------UUGUgGACUCGCGGCuGGC- -5'
8100 3' -56.2 NC_001978.2 + 30125 0.72 0.29998
Target:  5'- gGCCGuguGGGACuGCCUGaAGCGCuucacggacaCGACCGu -3'
miRNA:   3'- -CGGCu--UCUUG-UGGAC-UCGCG----------GCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 25861 0.71 0.304517
Target:  5'- gGCCGGAGucggcuucacgcuGCGCCUGAGCGaaGggcuuGCCGg -3'
miRNA:   3'- -CGGCUUCu------------UGUGGACUCGCggC-----UGGC- -5'
8100 3' -56.2 NC_001978.2 + 8816 0.71 0.336922
Target:  5'- cGCCGGucgggggcgaagcgGGGGCA-CUGAGCGCCGcacGCCc -3'
miRNA:   3'- -CGGCU--------------UCUUGUgGACUCGCGGC---UGGc -5'
8100 3' -56.2 NC_001978.2 + 11026 0.71 0.339389
Target:  5'- gGCgCGAAGu-CGCCUGGGCGCUGcggacgucuCCGg -3'
miRNA:   3'- -CG-GCUUCuuGUGGACUCGCGGCu--------GGC- -5'
8100 3' -56.2 NC_001978.2 + 19510 0.71 0.339389
Target:  5'- gGCCGGacguucgacacGGAGCugACC--GGCGCCGACCa -3'
miRNA:   3'- -CGGCU-----------UCUUG--UGGacUCGCGGCUGGc -5'
8100 3' -56.2 NC_001978.2 + 36092 0.71 0.339389
Target:  5'- cGCCGA----CACCUGGGCGCgCGaggaaGCCGa -3'
miRNA:   3'- -CGGCUucuuGUGGACUCGCG-GC-----UGGC- -5'
8100 3' -56.2 NC_001978.2 + 18163 0.7 0.356172
Target:  5'- cCCGAAGG---UCUGAGCGUCGAUCa -3'
miRNA:   3'- cGGCUUCUuguGGACUCGCGGCUGGc -5'
8100 3' -56.2 NC_001978.2 + 24969 0.72 0.284515
Target:  5'- gGCgCGAAG-ACGCUugccgaaUGGGCGCUGACCu -3'
miRNA:   3'- -CG-GCUUCuUGUGG-------ACUCGCGGCUGGc -5'
8100 3' -56.2 NC_001978.2 + 36647 0.73 0.238137
Target:  5'- uGCCGAcgcuGAGCGggaagcCCUGAGCGCCccugaGCCGg -3'
miRNA:   3'- -CGGCUu---CUUGU------GGACUCGCGGc----UGGC- -5'
8100 3' -56.2 NC_001978.2 + 15994 0.73 0.231966
Target:  5'- gGCCGGAGggU-CCgGAGgGuCCGGCCGg -3'
miRNA:   3'- -CGGCUUCuuGuGGaCUCgC-GGCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 35573 0.82 0.056886
Target:  5'- aGCCGGAGAcgGCGCCccUGAGCGUCGGCgCGa -3'
miRNA:   3'- -CGGCUUCU--UGUGG--ACUCGCGGCUG-GC- -5'
8100 3' -56.2 NC_001978.2 + 28216 0.78 0.11047
Target:  5'- cGCCGAAcacGcGCGCCUGAGCauCCGGCCGa -3'
miRNA:   3'- -CGGCUU---CuUGUGGACUCGc-GGCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 15449 0.77 0.142297
Target:  5'- uGCCGAAGGACACgCUGAacaacucCGUCGACCu -3'
miRNA:   3'- -CGGCUUCUUGUG-GACUc------GCGGCUGGc -5'
8100 3' -56.2 NC_001978.2 + 21524 0.77 0.142297
Target:  5'- cGCUGAGGcuguacgcGACGCCUGAGCGcCCGucuCCGc -3'
miRNA:   3'- -CGGCUUC--------UUGUGGACUCGC-GGCu--GGC- -5'
8100 3' -56.2 NC_001978.2 + 33847 0.75 0.172637
Target:  5'- gGCCGAcGGcguUACCcGGGUGCCGACCGu -3'
miRNA:   3'- -CGGCUuCUu--GUGGaCUCGCGGCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 18845 0.75 0.187327
Target:  5'- cGCUGcGGAGCGCCUGAGC-CUGcCCGu -3'
miRNA:   3'- -CGGCuUCUUGUGGACUCGcGGCuGGC- -5'
8100 3' -56.2 NC_001978.2 + 813 0.75 0.192984
Target:  5'- cGCCGGAGcacucgacccauucgGACACCUGGuauucgucgcugacGCGCUGACCc -3'
miRNA:   3'- -CGGCUUC---------------UUGUGGACU--------------CGCGGCUGGc -5'
8100 3' -56.2 NC_001978.2 + 9100 0.74 0.208619
Target:  5'- gGCUGAGGcuaAGCGCCUGGGUgaaGCCG-CCGg -3'
miRNA:   3'- -CGGCUUC---UUGUGGACUCG---CGGCuGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.