miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8100 3' -56.2 NC_001978.2 + 14237 0.66 0.629437
Target:  5'- uGCCGGAcaccaugccGCGCCcGAuaGCCGACCa -3'
miRNA:   3'- -CGGCUUcu-------UGUGGaCUcgCGGCUGGc -5'
8100 3' -56.2 NC_001978.2 + 38129 0.71 0.323188
Target:  5'- cGCCGAccgcGAACGCCauucGAGCGUC-ACCGg -3'
miRNA:   3'- -CGGCUu---CUUGUGGa---CUCGCGGcUGGC- -5'
8100 3' -56.2 NC_001978.2 + 5187 0.72 0.264203
Target:  5'- gGUCGGcGGAACG-CUGAGCGCCGGagcCCGa -3'
miRNA:   3'- -CGGCU-UCUUGUgGACUCGCGGCU---GGC- -5'
8100 3' -56.2 NC_001978.2 + 17399 1.1 0.000567
Target:  5'- uGCCGAAGAACACCUGAGCGCCGACCGc -3'
miRNA:   3'- -CGGCUUCUUGUGGACUCGCGGCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 35659 0.67 0.549253
Target:  5'- cCCGggGucuucggucgcgccGACGCUcagGGGCGCCGucuCCGg -3'
miRNA:   3'- cGGCuuC--------------UUGUGGa--CUCGCGGCu--GGC- -5'
8100 3' -56.2 NC_001978.2 + 30934 0.67 0.540623
Target:  5'- uGCCGAAGGAgUGCUUGAgaaugucGCGCUGAgUGg -3'
miRNA:   3'- -CGGCUUCUU-GUGGACU-------CGCGGCUgGC- -5'
8100 3' -56.2 NC_001978.2 + 5347 0.67 0.509751
Target:  5'- aUCGcGGAACgcucgacaGCCUGAGCgaugaGCUGACCGu -3'
miRNA:   3'- cGGCuUCUUG--------UGGACUCG-----CGGCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 23320 0.67 0.508699
Target:  5'- cGCCGAAGAGCugaGCCacAGCGuCCGcaacggacuguucGCCGg -3'
miRNA:   3'- -CGGCUUCUUG---UGGacUCGC-GGC-------------UGGC- -5'
8100 3' -56.2 NC_001978.2 + 12591 0.68 0.478619
Target:  5'- uGCCGGAGucguACAgCgUGAa-GCCGACCGg -3'
miRNA:   3'- -CGGCUUCu---UGU-GgACUcgCGGCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 37323 0.7 0.347708
Target:  5'- aGCUucgcGAGCACCUgacgGAGCGCCGuCCGc -3'
miRNA:   3'- -CGGcuu-CUUGUGGA----CUCGCGGCuGGC- -5'
8100 3' -56.2 NC_001978.2 + 36815 0.69 0.438631
Target:  5'- uCCgGAAGGACGuCCUGAacggccugggGCGCCGucuCCGg -3'
miRNA:   3'- cGG-CUUCUUGU-GGACU----------CGCGGCu--GGC- -5'
8100 3' -56.2 NC_001978.2 + 36989 0.68 0.485802
Target:  5'- aGCUGGGcGAACuuCUuccgcacgguggcaGGGUGCCGACCGg -3'
miRNA:   3'- -CGGCUU-CUUGugGA--------------CUCGCGGCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 33642 0.66 0.618364
Target:  5'- cCCGggGucACACCcGAcggucacgGCGCCGACa- -3'
miRNA:   3'- cGGCuuCu-UGUGGaCU--------CGCGGCUGgc -5'
8100 3' -56.2 NC_001978.2 + 5885 0.69 0.409927
Target:  5'- cGuuGAAGGuguCCgGGGCGCCGACgGu -3'
miRNA:   3'- -CggCUUCUuguGGaCUCGCGGCUGgC- -5'
8100 3' -56.2 NC_001978.2 + 26372 0.66 0.574285
Target:  5'- aCCGgcGAGCACa--AGCGCCGcGCCc -3'
miRNA:   3'- cGGCuuCUUGUGgacUCGCGGC-UGGc -5'
8100 3' -56.2 NC_001978.2 + 24004 0.68 0.499275
Target:  5'- uGCCGuAGGAAUGCCgaAGCGUCGAgCa -3'
miRNA:   3'- -CGGC-UUCUUGUGGacUCGCGGCUgGc -5'
8100 3' -56.2 NC_001978.2 + 2978 0.7 0.382421
Target:  5'- uGCCGucGAGCGCUgggGAGUGCCcccGCCc -3'
miRNA:   3'- -CGGCuuCUUGUGGa--CUCGCGGc--UGGc -5'
8100 3' -56.2 NC_001978.2 + 17769 0.72 0.278082
Target:  5'- aCCGAccuGGGugACCUGGGCGCCacguGCCc -3'
miRNA:   3'- cGGCU---UCUugUGGACUCGCGGc---UGGc -5'
8100 3' -56.2 NC_001978.2 + 3105 0.66 0.571004
Target:  5'- aGCCGGAccGAcgcgaacacugccgACACCUGaAGCGCgucaugcggagUGACCGu -3'
miRNA:   3'- -CGGCUU--CU--------------UGUGGAC-UCGCG-----------GCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 13752 0.67 0.530969
Target:  5'- uGCCGAcaAGCuucgugccguuGCCguugucGGCGCCGACCGc -3'
miRNA:   3'- -CGGCUucUUG-----------UGGac----UCGCGGCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.