miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8100 3' -56.2 NC_001978.2 + 17399 1.1 0.000567
Target:  5'- uGCCGAAGAACACCUGAGCGCCGACCGc -3'
miRNA:   3'- -CGGCUUCUUGUGGACUCGCGGCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 35808 0.85 0.035426
Target:  5'- cGCCGAAGAcgacgGCaagguucuugacgACCUGGGCGCCGACCu -3'
miRNA:   3'- -CGGCUUCU-----UG-------------UGGACUCGCGGCUGGc -5'
8100 3' -56.2 NC_001978.2 + 35573 0.82 0.056886
Target:  5'- aGCCGGAGAcgGCGCCccUGAGCGUCGGCgCGa -3'
miRNA:   3'- -CGGCUUCU--UGUGG--ACUCGCGGCUG-GC- -5'
8100 3' -56.2 NC_001978.2 + 28216 0.78 0.11047
Target:  5'- cGCCGAAcacGcGCGCCUGAGCauCCGGCCGa -3'
miRNA:   3'- -CGGCUU---CuUGUGGACUCGc-GGCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 15449 0.77 0.142297
Target:  5'- uGCCGAAGGACACgCUGAacaacucCGUCGACCu -3'
miRNA:   3'- -CGGCUUCUUGUG-GACUc------GCGGCUGGc -5'
8100 3' -56.2 NC_001978.2 + 21524 0.77 0.142297
Target:  5'- cGCUGAGGcuguacgcGACGCCUGAGCGcCCGucuCCGc -3'
miRNA:   3'- -CGGCUUC--------UUGUGGACUCGC-GGCu--GGC- -5'
8100 3' -56.2 NC_001978.2 + 15677 0.76 0.158983
Target:  5'- aGCCGuuGAACGCgUGAGCGCCccGCCc -3'
miRNA:   3'- -CGGCuuCUUGUGgACUCGCGGc-UGGc -5'
8100 3' -56.2 NC_001978.2 + 869 0.76 0.163423
Target:  5'- gGUCGAGugcuccGGCGCCUGGGCGCgCGACUGg -3'
miRNA:   3'- -CGGCUUc-----UUGUGGACUCGCG-GCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 33847 0.75 0.172637
Target:  5'- gGCCGAcGGcguUACCcGGGUGCCGACCGu -3'
miRNA:   3'- -CGGCUuCUu--GUGGaCUCGCGGCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 18845 0.75 0.187327
Target:  5'- cGCUGcGGAGCGCCUGAGC-CUGcCCGu -3'
miRNA:   3'- -CGGCuUCUUGUGGACUCGcGGCuGGC- -5'
8100 3' -56.2 NC_001978.2 + 813 0.75 0.192984
Target:  5'- cGCCGGAGcacucgacccauucgGACACCUGGuauucgucgcugacGCGCUGACCc -3'
miRNA:   3'- -CGGCUUC---------------UUGUGGACU--------------CGCGGCUGGc -5'
8100 3' -56.2 NC_001978.2 + 37771 0.74 0.197723
Target:  5'- cGUCGAAGAuCACCcagGGGCGCaCGACgGg -3'
miRNA:   3'- -CGGCUUCUuGUGGa--CUCGCG-GCUGgC- -5'
8100 3' -56.2 NC_001978.2 + 9100 0.74 0.208619
Target:  5'- gGCUGAGGcuaAGCGCCUGGGUgaaGCCG-CCGg -3'
miRNA:   3'- -CGGCUUC---UUGUGGACUCG---CGGCuGGC- -5'
8100 3' -56.2 NC_001978.2 + 28104 0.74 0.214258
Target:  5'- cGCCGAcgggucgacguAGAACGCaCUGAGCgGCUugaGGCCGg -3'
miRNA:   3'- -CGGCU-----------UCUUGUG-GACUCG-CGG---CUGGC- -5'
8100 3' -56.2 NC_001978.2 + 15994 0.73 0.231966
Target:  5'- gGCCGGAGggU-CCgGAGgGuCCGGCCGg -3'
miRNA:   3'- -CGGCUUCuuGuGGaCUCgC-GGCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 36647 0.73 0.238137
Target:  5'- uGCCGAcgcuGAGCGggaagcCCUGAGCGCCccugaGCCGg -3'
miRNA:   3'- -CGGCUu---CUUGU------GGACUCGCGGc----UGGC- -5'
8100 3' -56.2 NC_001978.2 + 103 0.73 0.244445
Target:  5'- gGCCuGggGGGCGCCUGGGU-CCGGCgGc -3'
miRNA:   3'- -CGG-CuuCUUGUGGACUCGcGGCUGgC- -5'
8100 3' -56.2 NC_001978.2 + 5187 0.72 0.264203
Target:  5'- gGUCGGcGGAACG-CUGAGCGCCGGagcCCGa -3'
miRNA:   3'- -CGGCU-UCUUGUgGACUCGCGGCU---GGC- -5'
8100 3' -56.2 NC_001978.2 + 17769 0.72 0.278082
Target:  5'- aCCGAccuGGGugACCUGGGCGCCacguGCCc -3'
miRNA:   3'- cGGCU---UCUugUGGACUCGCGGc---UGGc -5'
8100 3' -56.2 NC_001978.2 + 24969 0.72 0.284515
Target:  5'- gGCgCGAAG-ACGCUugccgaaUGGGCGCUGACCu -3'
miRNA:   3'- -CG-GCUUCuUGUGG-------ACUCGCGGCUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.