miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8100 3' -56.2 NC_001978.2 + 30125 0.72 0.29998
Target:  5'- gGCCGuguGGGACuGCCUGaAGCGCuucacggacaCGACCGu -3'
miRNA:   3'- -CGGCu--UCUUG-UGGAC-UCGCG----------GCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 34150 0.72 0.29998
Target:  5'- cGCCGGAGcgugcccacgugGGCAaCUGAGCGCCG-UCGa -3'
miRNA:   3'- -CGGCUUC------------UUGUgGACUCGCGGCuGGC- -5'
8100 3' -56.2 NC_001978.2 + 25861 0.71 0.304517
Target:  5'- gGCCGGAGucggcuucacgcuGCGCCUGAGCGaaGggcuuGCCGg -3'
miRNA:   3'- -CGGCUUCu------------UGUGGACUCGCggC-----UGGC- -5'
8100 3' -56.2 NC_001978.2 + 38129 0.71 0.323188
Target:  5'- cGCCGAccgcGAACGCCauucGAGCGUC-ACCGg -3'
miRNA:   3'- -CGGCUu---CUUGUGGa---CUCGCGGcUGGC- -5'
8100 3' -56.2 NC_001978.2 + 8816 0.71 0.336922
Target:  5'- cGCCGGucgggggcgaagcgGGGGCA-CUGAGCGCCGcacGCCc -3'
miRNA:   3'- -CGGCU--------------UCUUGUgGACUCGCGGC---UGGc -5'
8100 3' -56.2 NC_001978.2 + 11026 0.71 0.339389
Target:  5'- gGCgCGAAGu-CGCCUGGGCGCUGcggacgucuCCGg -3'
miRNA:   3'- -CG-GCUUCuuGUGGACUCGCGGCu--------GGC- -5'
8100 3' -56.2 NC_001978.2 + 19510 0.71 0.339389
Target:  5'- gGCCGGacguucgacacGGAGCugACC--GGCGCCGACCa -3'
miRNA:   3'- -CGGCU-----------UCUUG--UGGacUCGCGGCUGGc -5'
8100 3' -56.2 NC_001978.2 + 36092 0.71 0.339389
Target:  5'- cGCCGA----CACCUGGGCGCgCGaggaaGCCGa -3'
miRNA:   3'- -CGGCUucuuGUGGACUCGCG-GC-----UGGC- -5'
8100 3' -56.2 NC_001978.2 + 37323 0.7 0.347708
Target:  5'- aGCUucgcGAGCACCUgacgGAGCGCCGuCCGc -3'
miRNA:   3'- -CGGcuu-CUUGUGGA----CUCGCGGCuGGC- -5'
8100 3' -56.2 NC_001978.2 + 18163 0.7 0.356172
Target:  5'- cCCGAAGG---UCUGAGCGUCGAUCa -3'
miRNA:   3'- cGGCUUCUuguGGACUCGCGGCUGGc -5'
8100 3' -56.2 NC_001978.2 + 33437 0.7 0.37353
Target:  5'- gGCCGAAGAAagACCgc-GCGCUGAgCCGc -3'
miRNA:   3'- -CGGCUUCUUg-UGGacuCGCGGCU-GGC- -5'
8100 3' -56.2 NC_001978.2 + 19424 0.7 0.37353
Target:  5'- aGCgCGAAGAGCGCCUGAaccgugacccgcGCGgUGACg- -3'
miRNA:   3'- -CG-GCUUCUUGUGGACU------------CGCgGCUGgc -5'
8100 3' -56.2 NC_001978.2 + 2978 0.7 0.382421
Target:  5'- uGCCGucGAGCGCUgggGAGUGCCcccGCCc -3'
miRNA:   3'- -CGGCuuCUUGUGGa--CUCGCGGc--UGGc -5'
8100 3' -56.2 NC_001978.2 + 1556 0.69 0.400622
Target:  5'- cGCCGc-GAucaugcuuuacCACCUGAuaGCCGACCGg -3'
miRNA:   3'- -CGGCuuCUu----------GUGGACUcgCGGCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 5885 0.69 0.409927
Target:  5'- cGuuGAAGGuguCCgGGGCGCCGACgGu -3'
miRNA:   3'- -CggCUUCUuguGGaCUCGCGGCUGgC- -5'
8100 3' -56.2 NC_001978.2 + 7345 0.69 0.409927
Target:  5'- gGCuCGAAGGucgccuucaaGCACCUGGguuGCGUggCGACCGa -3'
miRNA:   3'- -CG-GCUUCU----------UGUGGACU---CGCG--GCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 26067 0.69 0.409927
Target:  5'- gGCCGAAGucgcGCACCguaccGGCGCCGuuCa -3'
miRNA:   3'- -CGGCUUCu---UGUGGac---UCGCGGCugGc -5'
8100 3' -56.2 NC_001978.2 + 36775 0.69 0.428934
Target:  5'- aGCCGAcgccGGA--GCCUGAGCcggaGCCuGCCGa -3'
miRNA:   3'- -CGGCU----UCUugUGGACUCG----CGGcUGGC- -5'
8100 3' -56.2 NC_001978.2 + 36815 0.69 0.438631
Target:  5'- uCCgGAAGGACGuCCUGAacggccugggGCGCCGucuCCGg -3'
miRNA:   3'- cGG-CUUCUUGU-GGACU----------CGCGGCu--GGC- -5'
8100 3' -56.2 NC_001978.2 + 25625 0.69 0.448451
Target:  5'- aGCCuGAAGAACccggacgggcaGCgCUGGGCGCCGuauggcguguuCCGg -3'
miRNA:   3'- -CGG-CUUCUUG-----------UG-GACUCGCGGCu----------GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.