Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8101 | 3' | -61 | NC_001978.2 | + | 17466 | 0.66 | 0.341879 |
Target: 5'- cCGCCgacCGuGUACGCauaGUCAGCGUCgUa- -3' miRNA: 3'- -GCGG---GC-CGUGCGg--CAGUCGCAGgAac -5' |
|||||||
8101 | 3' | -61 | NC_001978.2 | + | 15999 | 0.66 | 0.34512 |
Target: 5'- gCGCCCGuCGCGCCcguGUCGcccuugucgcccuucGCGcCCUUGa -3' miRNA: 3'- -GCGGGCcGUGCGG---CAGU---------------CGCaGGAAC- -5' |
|||||||
8101 | 3' | -61 | NC_001978.2 | + | 15320 | 0.66 | 0.36672 |
Target: 5'- aCGCCaaCGGCAa--CGUCGGCGUUCg-- -3' miRNA: 3'- -GCGG--GCCGUgcgGCAGUCGCAGGaac -5' |
|||||||
8101 | 3' | -61 | NC_001978.2 | + | 12475 | 0.7 | 0.185469 |
Target: 5'- aCGUCCGGCACaCgGUCAGCGUgaacguggucgacgCCUUc -3' miRNA: 3'- -GCGGGCCGUGcGgCAGUCGCA--------------GGAAc -5' |
|||||||
8101 | 3' | -61 | NC_001978.2 | + | 11425 | 0.69 | 0.236214 |
Target: 5'- aCGCCCGGCAUgaaaGCCGcCugaagGGCGUUCa-- -3' miRNA: 3'- -GCGGGCCGUG----CGGCaG-----UCGCAGGaac -5' |
|||||||
8101 | 3' | -61 | NC_001978.2 | + | 11087 | 0.66 | 0.341072 |
Target: 5'- gCGCCCaGGCgacuucGCGCCcaaucgcgaacggGUCGGCGUUCg-- -3' miRNA: 3'- -GCGGG-CCG------UGCGG-------------CAGUCGCAGGaac -5' |
|||||||
8101 | 3' | -61 | NC_001978.2 | + | 5847 | 0.66 | 0.341879 |
Target: 5'- uGCCacaGGUACuGaCCGUUcGCGUCCUUc -3' miRNA: 3'- gCGGg--CCGUG-C-GGCAGuCGCAGGAAc -5' |
|||||||
8101 | 3' | -61 | NC_001978.2 | + | 1825 | 0.68 | 0.281705 |
Target: 5'- aGCCCuGU-UGCCGUcCGGCGUCCg-- -3' miRNA: 3'- gCGGGcCGuGCGGCA-GUCGCAGGaac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home