Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8101 | 3' | -61 | NC_001978.2 | + | 19441 | 0.71 | 0.150983 |
Target: 5'- gCGCaCCGcuuGCACGUcaCGUCGGCGUCCg-- -3' miRNA: 3'- -GCG-GGC---CGUGCG--GCAGUCGCAGGaac -5' |
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8101 | 3' | -61 | NC_001978.2 | + | 38106 | 0.72 | 0.143029 |
Target: 5'- gCGUcaCCGGCuCGCCGUCGuCGUCCUg- -3' miRNA: 3'- -GCG--GGCCGuGCGGCAGUcGCAGGAac -5' |
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8101 | 3' | -61 | NC_001978.2 | + | 19736 | 0.73 | 0.114916 |
Target: 5'- uGCCCaGCGCGCgagccuUGUCgaaGGCGUCCUUGc -3' miRNA: 3'- gCGGGcCGUGCG------GCAG---UCGCAGGAAC- -5' |
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8101 | 3' | -61 | NC_001978.2 | + | 22337 | 0.75 | 0.089493 |
Target: 5'- gGUCCGGCGucggguUGCCGUCGGCGUCg--- -3' miRNA: 3'- gCGGGCCGU------GCGGCAGUCGCAGgaac -5' |
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8101 | 3' | -61 | NC_001978.2 | + | 26791 | 0.76 | 0.071465 |
Target: 5'- gCGCCCGaaCACGuCCGUCAGCGUCUccgUGa -3' miRNA: 3'- -GCGGGCc-GUGC-GGCAGUCGCAGGa--AC- -5' |
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8101 | 3' | -61 | NC_001978.2 | + | 35157 | 0.78 | 0.046635 |
Target: 5'- uGCCCGGCuucugaguuCGCCGUCAGCGcCCc-- -3' miRNA: 3'- gCGGGCCGu--------GCGGCAGUCGCaGGaac -5' |
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8101 | 3' | -61 | NC_001978.2 | + | 39230 | 0.81 | 0.026985 |
Target: 5'- uCGCCCcgggucGGCACGgCGUCAGCGUCCa-- -3' miRNA: 3'- -GCGGG------CCGUGCgGCAGUCGCAGGaac -5' |
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8101 | 3' | -61 | NC_001978.2 | + | 17912 | 1.07 | 0.000299 |
Target: 5'- uCGCCCGGCACGCCGUCAGCGUCCUUGc -3' miRNA: 3'- -GCGGGCCGUGCGGCAGUCGCAGGAAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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