miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8102 5' -57.9 NC_001978.2 + 18002 1.11 0.000275
Target:  5'- uUGAACCAUGCGGCACCCGGGAACGGCu -3'
miRNA:   3'- -ACUUGGUACGCCGUGGGCCCUUGCCG- -5'
8102 5' -57.9 NC_001978.2 + 613 0.77 0.092584
Target:  5'- aGGACCG-GCGGCAaccuUCCGGGcuucAGCGGCa -3'
miRNA:   3'- aCUUGGUaCGCCGU----GGGCCC----UUGCCG- -5'
8102 5' -57.9 NC_001978.2 + 10955 0.77 0.103732
Target:  5'- cGAACCAUGC-GUugUCGGGuuccGCGGCg -3'
miRNA:   3'- aCUUGGUACGcCGugGGCCCu---UGCCG- -5'
8102 5' -57.9 NC_001978.2 + 25471 0.76 0.115808
Target:  5'- cGAACCGgucgGCGGCGuagucggcggcauCCUGGGugAGCGGCa -3'
miRNA:   3'- aCUUGGUa---CGCCGU-------------GGGCCC--UUGCCG- -5'
8102 5' -57.9 NC_001978.2 + 32194 0.74 0.159427
Target:  5'- -cAGCCAUGCGGCaagcugacgcgccugAgCCGGGGucaucACGGCa -3'
miRNA:   3'- acUUGGUACGCCG---------------UgGGCCCU-----UGCCG- -5'
8102 5' -57.9 NC_001978.2 + 104 0.73 0.171163
Target:  5'- -uGGCCuggGgGGCGCCUGGGucCGGCg -3'
miRNA:   3'- acUUGGua-CgCCGUGGGCCCuuGCCG- -5'
8102 5' -57.9 NC_001978.2 + 29725 0.73 0.175878
Target:  5'- -aGACCcgGCGGaGCCUGGGAACGuuGCu -3'
miRNA:   3'- acUUGGuaCGCCgUGGGCCCUUGC--CG- -5'
8102 5' -57.9 NC_001978.2 + 12447 0.73 0.175878
Target:  5'- cGGAUCAgGCGGCuuaCGGGAACGGg -3'
miRNA:   3'- aCUUGGUaCGCCGuggGCCCUUGCCg -5'
8102 5' -57.9 NC_001978.2 + 31438 0.73 0.175878
Target:  5'- gGAGCCAUG-GGCcgaaGCCCuaucGGGuGCGGCa -3'
miRNA:   3'- aCUUGGUACgCCG----UGGG----CCCuUGCCG- -5'
8102 5' -57.9 NC_001978.2 + 5644 0.73 0.185658
Target:  5'- cUGAcCCGUGcCGGUACCCGucaGGAAgUGGCg -3'
miRNA:   3'- -ACUuGGUAC-GCCGUGGGC---CCUU-GCCG- -5'
8102 5' -57.9 NC_001978.2 + 24827 0.73 0.195913
Target:  5'- -aGAUCAUGCGGCGCUgGGGcuacCGGUg -3'
miRNA:   3'- acUUGGUACGCCGUGGgCCCuu--GCCG- -5'
8102 5' -57.9 NC_001978.2 + 41152 0.72 0.229688
Target:  5'- aGAGCCAUgcgaaGCGGCgugcugcuaucGCCCGuGGGaacaacgcuGCGGCg -3'
miRNA:   3'- aCUUGGUA-----CGCCG-----------UGGGC-CCU---------UGCCG- -5'
8102 5' -57.9 NC_001978.2 + 2576 0.72 0.229688
Target:  5'- cUGAGCCAcGaCGGCaACCCGGcGuuggguCGGCa -3'
miRNA:   3'- -ACUUGGUaC-GCCG-UGGGCC-Cuu----GCCG- -5'
8102 5' -57.9 NC_001978.2 + 7974 0.71 0.235773
Target:  5'- gUGAGCUugauUGCGGgcgucacgccguCGCCCGGGucgagcacacggAACGGCa -3'
miRNA:   3'- -ACUUGGu---ACGCC------------GUGGGCCC------------UUGCCG- -5'
8102 5' -57.9 NC_001978.2 + 37221 0.71 0.241994
Target:  5'- cGcGCCAUGUgcgaagaccuaGGCAUCgGGcGGACGGCg -3'
miRNA:   3'- aCuUGGUACG-----------CCGUGGgCC-CUUGCCG- -5'
8102 5' -57.9 NC_001978.2 + 4352 0.71 0.24835
Target:  5'- -cGACCuggGCGGCuuCCGGGAAC-GCa -3'
miRNA:   3'- acUUGGua-CGCCGugGGCCCUUGcCG- -5'
8102 5' -57.9 NC_001978.2 + 5238 0.7 0.281505
Target:  5'- aGGACCGUGCcuCACCCaGGuugcccgcacgaaGAACGGCg -3'
miRNA:   3'- aCUUGGUACGccGUGGG-CC-------------CUUGCCG- -5'
8102 5' -57.9 NC_001978.2 + 25569 0.7 0.289415
Target:  5'- -uGACCc-GUGGCGCCCaGGGGcgugaccugaGCGGCa -3'
miRNA:   3'- acUUGGuaCGCCGUGGG-CCCU----------UGCCG- -5'
8102 5' -57.9 NC_001978.2 + 37731 0.7 0.30424
Target:  5'- gGAGCCAUGaagGGCuauugcgcgcuGCCCGacGACGGCg -3'
miRNA:   3'- aCUUGGUACg--CCG-----------UGGGCccUUGCCG- -5'
8102 5' -57.9 NC_001978.2 + 18471 0.69 0.311869
Target:  5'- aGAACg--GCGuuACCCGGGAAgucCGGCu -3'
miRNA:   3'- aCUUGguaCGCcgUGGGCCCUU---GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.