miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8102 5' -57.9 NC_001978.2 + 104 0.73 0.171163
Target:  5'- -uGGCCuggGgGGCGCCUGGGucCGGCg -3'
miRNA:   3'- acUUGGua-CgCCGUGGGCCCuuGCCG- -5'
8102 5' -57.9 NC_001978.2 + 280 0.68 0.396041
Target:  5'- cGGAaCGUGUGGCAagCCGGuAugGGCg -3'
miRNA:   3'- aCUUgGUACGCCGUg-GGCCcUugCCG- -5'
8102 5' -57.9 NC_001978.2 + 613 0.77 0.092584
Target:  5'- aGGACCG-GCGGCAaccuUCCGGGcuucAGCGGCa -3'
miRNA:   3'- aCUUGGUaCGCCGU----GGGCCC----UUGCCG- -5'
8102 5' -57.9 NC_001978.2 + 1749 0.66 0.47309
Target:  5'- cGggUCGUGuCGGCggACgCCGG--ACGGCa -3'
miRNA:   3'- aCuuGGUAC-GCCG--UG-GGCCcuUGCCG- -5'
8102 5' -57.9 NC_001978.2 + 2576 0.72 0.229688
Target:  5'- cUGAGCCAcGaCGGCaACCCGGcGuuggguCGGCa -3'
miRNA:   3'- -ACUUGGUaC-GCCG-UGGGCC-Cuu----GCCG- -5'
8102 5' -57.9 NC_001978.2 + 4352 0.71 0.24835
Target:  5'- -cGACCuggGCGGCuuCCGGGAAC-GCa -3'
miRNA:   3'- acUUGGua-CGCCGugGGCCCUUGcCG- -5'
8102 5' -57.9 NC_001978.2 + 5238 0.7 0.281505
Target:  5'- aGGACCGUGCcuCACCCaGGuugcccgcacgaaGAACGGCg -3'
miRNA:   3'- aCUUGGUACGccGUGGG-CC-------------CUUGCCG- -5'
8102 5' -57.9 NC_001978.2 + 5644 0.73 0.185658
Target:  5'- cUGAcCCGUGcCGGUACCCGucaGGAAgUGGCg -3'
miRNA:   3'- -ACUuGGUAC-GCCGUGGGC---CCUU-GCCG- -5'
8102 5' -57.9 NC_001978.2 + 5817 0.69 0.327561
Target:  5'- --uACCGU-CGGCGCCCcGGAcaccuucaACGGCa -3'
miRNA:   3'- acuUGGUAcGCCGUGGGcCCU--------UGCCG- -5'
8102 5' -57.9 NC_001978.2 + 6757 0.67 0.453096
Target:  5'- cUGAgcgcGCCGUGUauGGCAUUCGGGAuuacgugaaGGCc -3'
miRNA:   3'- -ACU----UGGUACG--CCGUGGGCCCUug-------CCG- -5'
8102 5' -57.9 NC_001978.2 + 7883 0.69 0.352178
Target:  5'- cGuuCCGUGUGcucgACCCGGGcGACGGCg -3'
miRNA:   3'- aCuuGGUACGCcg--UGGGCCC-UUGCCG- -5'
8102 5' -57.9 NC_001978.2 + 7974 0.71 0.235773
Target:  5'- gUGAGCUugauUGCGGgcgucacgccguCGCCCGGGucgagcacacggAACGGCa -3'
miRNA:   3'- -ACUUGGu---ACGCC------------GUGGGCCC------------UUGCCG- -5'
8102 5' -57.9 NC_001978.2 + 8615 0.66 0.493517
Target:  5'- cGAcauacGCCAUGgCGcgaaGCAUCgGGGcACGGCg -3'
miRNA:   3'- aCU-----UGGUAC-GC----CGUGGgCCCuUGCCG- -5'
8102 5' -57.9 NC_001978.2 + 9355 0.66 0.487346
Target:  5'- cGAAgCGUuugacauucucguucGUGGCGCCCaGGAA-GGCg -3'
miRNA:   3'- aCUUgGUA---------------CGCCGUGGGcCCUUgCCG- -5'
8102 5' -57.9 NC_001978.2 + 10955 0.77 0.103732
Target:  5'- cGAACCAUGC-GUugUCGGGuuccGCGGCg -3'
miRNA:   3'- aCUUGGUACGcCGugGGCCCu---UGCCG- -5'
8102 5' -57.9 NC_001978.2 + 11484 0.69 0.327561
Target:  5'- cGAagGCCGUucggucggacGCuGCGCCCGGGaAACGGa -3'
miRNA:   3'- aCU--UGGUA----------CGcCGUGGGCCC-UUGCCg -5'
8102 5' -57.9 NC_001978.2 + 12150 0.68 0.378078
Target:  5'- cGGuCCuuaucgGgGGCACggCUGGGGGCGGCa -3'
miRNA:   3'- aCUuGGua----CgCCGUG--GGCCCUUGCCG- -5'
8102 5' -57.9 NC_001978.2 + 12399 0.66 0.514339
Target:  5'- -cGGCCGUGuCGGgACCguCGGcGAAgCGGCa -3'
miRNA:   3'- acUUGGUAC-GCCgUGG--GCC-CUU-GCCG- -5'
8102 5' -57.9 NC_001978.2 + 12447 0.73 0.175878
Target:  5'- cGGAUCAgGCGGCuuaCGGGAACGGg -3'
miRNA:   3'- aCUUGGUaCGCCGuggGCCCUUGCCg -5'
8102 5' -57.9 NC_001978.2 + 16421 0.68 0.386991
Target:  5'- cGAAgCGUGguCGGUcuACCCGGG--CGGCg -3'
miRNA:   3'- aCUUgGUAC--GCCG--UGGGCCCuuGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.