miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8102 5' -57.9 NC_001978.2 + 30646 0.66 0.47309
Target:  5'- cGGACguUGCGGCGCuuGaaGACGuGCu -3'
miRNA:   3'- aCUUGguACGCCGUGggCccUUGC-CG- -5'
8102 5' -57.9 NC_001978.2 + 7883 0.69 0.352178
Target:  5'- cGuuCCGUGUGcucgACCCGGGcGACGGCg -3'
miRNA:   3'- aCuuGGUACGCcg--UGGGCCC-UUGCCG- -5'
8102 5' -57.9 NC_001978.2 + 12150 0.68 0.378078
Target:  5'- cGGuCCuuaucgGgGGCACggCUGGGGGCGGCa -3'
miRNA:   3'- aCUuGGua----CgCCGUG--GGCCCUUGCCG- -5'
8102 5' -57.9 NC_001978.2 + 16421 0.68 0.386991
Target:  5'- cGAAgCGUGguCGGUcuACCCGGG--CGGCg -3'
miRNA:   3'- aCUUgGUAC--GCCG--UGGGCCCuuGCCG- -5'
8102 5' -57.9 NC_001978.2 + 280 0.68 0.396041
Target:  5'- cGGAaCGUGUGGCAagCCGGuAugGGCg -3'
miRNA:   3'- aCUUgGUACGCCGUg-GGCCcUugCCG- -5'
8102 5' -57.9 NC_001978.2 + 36697 0.67 0.433572
Target:  5'- cUGAGCCGguaccgGCGGagccugaGCCCGucacggagccGGAgACGGCg -3'
miRNA:   3'- -ACUUGGUa-----CGCCg------UGGGC----------CCU-UGCCG- -5'
8102 5' -57.9 NC_001978.2 + 36276 0.67 0.443274
Target:  5'- cGAACCcgGCGGgugcugACCgGGGGGCGu- -3'
miRNA:   3'- aCUUGGuaCGCCg-----UGGgCCCUUGCcg -5'
8102 5' -57.9 NC_001978.2 + 6757 0.67 0.453096
Target:  5'- cUGAgcgcGCCGUGUauGGCAUUCGGGAuuacgugaaGGCc -3'
miRNA:   3'- -ACU----UGGUACG--CCGUGGGCCCUug-------CCG- -5'
8102 5' -57.9 NC_001978.2 + 35571 0.67 0.453096
Target:  5'- cGAGCCGgagaCGGCGCCCcuGAGCgucGGCg -3'
miRNA:   3'- aCUUGGUac--GCCGUGGGccCUUG---CCG- -5'
8102 5' -57.9 NC_001978.2 + 34657 0.69 0.352178
Target:  5'- cUGAGCCccGuuGCACCCGGc-ACGGUu -3'
miRNA:   3'- -ACUUGGuaCgcCGUGGGCCcuUGCCG- -5'
8102 5' -57.9 NC_001978.2 + 38581 0.69 0.343828
Target:  5'- cGGGCaCGU-CGGCGuuCGGG-ACGGCg -3'
miRNA:   3'- aCUUG-GUAcGCCGUggGCCCuUGCCG- -5'
8102 5' -57.9 NC_001978.2 + 5817 0.69 0.327561
Target:  5'- --uACCGU-CGGCGCCCcGGAcaccuucaACGGCa -3'
miRNA:   3'- acuUGGUAcGCCGUGGGcCCU--------UGCCG- -5'
8102 5' -57.9 NC_001978.2 + 12447 0.73 0.175878
Target:  5'- cGGAUCAgGCGGCuuaCGGGAACGGg -3'
miRNA:   3'- aCUUGGUaCGCCGuggGCCCUUGCCg -5'
8102 5' -57.9 NC_001978.2 + 24827 0.73 0.195913
Target:  5'- -aGAUCAUGCGGCGCUgGGGcuacCGGUg -3'
miRNA:   3'- acUUGGUACGCCGUGGgCCCuu--GCCG- -5'
8102 5' -57.9 NC_001978.2 + 2576 0.72 0.229688
Target:  5'- cUGAGCCAcGaCGGCaACCCGGcGuuggguCGGCa -3'
miRNA:   3'- -ACUUGGUaC-GCCG-UGGGCC-Cuu----GCCG- -5'
8102 5' -57.9 NC_001978.2 + 41152 0.72 0.229688
Target:  5'- aGAGCCAUgcgaaGCGGCgugcugcuaucGCCCGuGGGaacaacgcuGCGGCg -3'
miRNA:   3'- aCUUGGUA-----CGCCG-----------UGGGC-CCU---------UGCCG- -5'
8102 5' -57.9 NC_001978.2 + 37221 0.71 0.241994
Target:  5'- cGcGCCAUGUgcgaagaccuaGGCAUCgGGcGGACGGCg -3'
miRNA:   3'- aCuUGGUACG-----------CCGUGGgCC-CUUGCCG- -5'
8102 5' -57.9 NC_001978.2 + 4352 0.71 0.24835
Target:  5'- -cGACCuggGCGGCuuCCGGGAAC-GCa -3'
miRNA:   3'- acUUGGua-CGCCGugGGCCCUUGcCG- -5'
8102 5' -57.9 NC_001978.2 + 25569 0.7 0.289415
Target:  5'- -uGACCc-GUGGCGCCCaGGGGcgugaccugaGCGGCa -3'
miRNA:   3'- acUUGGuaCGCCGUGGG-CCCU----------UGCCG- -5'
8102 5' -57.9 NC_001978.2 + 37731 0.7 0.30424
Target:  5'- gGAGCCAUGaagGGCuauugcgcgcuGCCCGacGACGGCg -3'
miRNA:   3'- aCUUGGUACg--CCG-----------UGGGCccUUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.