Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8103 | 5' | -51.5 | NC_001978.2 | + | 18665 | 1.12 | 0.001225 |
Target: 5'- gCGACGCGCUGAUAUCCGUAACGCUGCc -3' miRNA: 3'- -GCUGCGCGACUAUAGGCAUUGCGACG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 41165 | 0.78 | 0.241369 |
Target: 5'- gCGGCGUGCUGcUAUcgcCCGUGggaacaACGCUGCg -3' miRNA: 3'- -GCUGCGCGACuAUA---GGCAU------UGCGACG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 31304 | 0.78 | 0.241369 |
Target: 5'- cCGACGCGCUGAg--UgGUGACGgUGUg -3' miRNA: 3'- -GCUGCGCGACUauaGgCAUUGCgACG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 32605 | 0.74 | 0.421892 |
Target: 5'- uCGACGCGUacgaGUAUCgCGUGuccgGCGCUGCc -3' miRNA: 3'- -GCUGCGCGac--UAUAG-GCAU----UGCGACG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 25643 | 0.73 | 0.46242 |
Target: 5'- gGGCaGCGCUGGgcgCCGUAugGCgUGUu -3' miRNA: 3'- gCUG-CGCGACUauaGGCAUugCG-ACG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 4456 | 0.71 | 0.582805 |
Target: 5'- uGGgGCGCacgucuUCCGgcACGCUGCg -3' miRNA: 3'- gCUgCGCGacuau-AGGCauUGCGACG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 17530 | 0.7 | 0.627333 |
Target: 5'- cCGACGCGCacgcuugcgcaGAUAcacgCCGUcgcccucAGCGCUGCc -3' miRNA: 3'- -GCUGCGCGa----------CUAUa---GGCA-------UUGCGACG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 41206 | 0.69 | 0.674201 |
Target: 5'- aGAUGCGUcgUGcUAUCCGUAAgGCaguggGCg -3' miRNA: 3'- gCUGCGCG--ACuAUAGGCAUUgCGa----CG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 24491 | 0.69 | 0.675339 |
Target: 5'- uCGACGCGCUGAgcaacgccauaacCCGggGCGCgucgGUu -3' miRNA: 3'- -GCUGCGCGACUaua----------GGCauUGCGa---CG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 14175 | 0.68 | 0.730286 |
Target: 5'- gGGCGCGgcaUGGUGUCCGgcAACGUguggucauccUGCg -3' miRNA: 3'- gCUGCGCg--ACUAUAGGCa-UUGCG----------ACG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 6048 | 0.68 | 0.740145 |
Target: 5'- uCGGCGCGCUGAaggaAUCgGUAAacgaucuggucagUGCUGa -3' miRNA: 3'- -GCUGCGCGACUa---UAGgCAUU-------------GCGACg -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 15863 | 0.68 | 0.741235 |
Target: 5'- cCGACGgGgUGcccguguUGUUCGUGuaccACGCUGCg -3' miRNA: 3'- -GCUGCgCgACu------AUAGGCAU----UGCGACG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 855 | 0.68 | 0.741235 |
Target: 5'- uGACGCGCUGAcccuUCCGguuguaaGCcGCc -3' miRNA: 3'- gCUGCGCGACUau--AGGCauug---CGaCG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 32347 | 0.68 | 0.752065 |
Target: 5'- aCGGCGCGUgaacGUCCGUc-CGCUGg -3' miRNA: 3'- -GCUGCGCGacuaUAGGCAuuGCGACg -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 2715 | 0.67 | 0.773315 |
Target: 5'- aCGACGCGUguuccUUCGUGAUGC-GCg -3' miRNA: 3'- -GCUGCGCGacuauAGGCAUUGCGaCG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 7730 | 0.67 | 0.773315 |
Target: 5'- aCGACGCGUUuGUGUCCG--GCGaagugUGCu -3' miRNA: 3'- -GCUGCGCGAcUAUAGGCauUGCg----ACG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 34306 | 0.67 | 0.773315 |
Target: 5'- cCGACgGCGCaUGAcgUAUCgCGUuGCGCUcaGCg -3' miRNA: 3'- -GCUG-CGCG-ACU--AUAG-GCAuUGCGA--CG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 31722 | 0.67 | 0.78371 |
Target: 5'- gCGACGCGCUGAacaaaugGUUCGacggauggacUGACGCa-- -3' miRNA: 3'- -GCUGCGCGACUa------UAGGC----------AUUGCGacg -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 38143 | 0.67 | 0.792919 |
Target: 5'- gGGCGagcCGCUGAcGUCCcgaaggcGUGGCGCgGCu -3' miRNA: 3'- gCUGC---GCGACUaUAGG-------CAUUGCGaCG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 26362 | 0.67 | 0.793934 |
Target: 5'- aCGACGCGCauUGAUGcacUCa-UGACGgaGCu -3' miRNA: 3'- -GCUGCGCG--ACUAU---AGgcAUUGCgaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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