Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8103 | 5' | -51.5 | NC_001978.2 | + | 18555 | 0.66 | 0.868184 |
Target: 5'- gGGCGCGCUcagucgggcaagGAU-UCCGUcggGGCGCgucuccgGCa -3' miRNA: 3'- gCUGCGCGA------------CUAuAGGCA---UUGCGa------CG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 5678 | 0.67 | 0.807938 |
Target: 5'- cCGACGCGCUGAUugAUcucuuccaugaggucCCGUcGGCGUaccGCa -3' miRNA: 3'- -GCUGCGCGACUA--UA---------------GGCA-UUGCGa--CG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 23644 | 0.67 | 0.813821 |
Target: 5'- aGACGaCGUUGAgcgcGUCggcaaggGUGGCGCUGUg -3' miRNA: 3'- gCUGC-GCGACUa---UAGg------CAUUGCGACG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 3136 | 0.66 | 0.822506 |
Target: 5'- uGACGCcggaaugGCUcGAcUAUCCG-AACGCUGa -3' miRNA: 3'- gCUGCG-------CGA-CU-AUAGGCaUUGCGACg -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 18952 | 0.66 | 0.842076 |
Target: 5'- cCGGCaCGCUGAg--CCG-GACGC-GCa -3' miRNA: 3'- -GCUGcGCGACUauaGGCaUUGCGaCG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 15423 | 0.66 | 0.858015 |
Target: 5'- uGGCGCGCgcaccuauUCCaUggUGCUGCc -3' miRNA: 3'- gCUGCGCGacuau---AGGcAuuGCGACG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 11025 | 0.66 | 0.859736 |
Target: 5'- gGGCGCGaa-GUcgCCugGGCGCUGCg -3' miRNA: 3'- gCUGCGCgacUAuaGGcaUUGCGACG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 18148 | 0.66 | 0.859736 |
Target: 5'- gGACGCGCUGAagGUCCcgAAgGuCUGa -3' miRNA: 3'- gCUGCGCGACUa-UAGGcaUUgC-GACg -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 13964 | 0.66 | 0.868184 |
Target: 5'- uCGACGuCGUUGAUGagaaCGgcACGgaGCu -3' miRNA: 3'- -GCUGC-GCGACUAUag--GCauUGCgaCG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 26362 | 0.67 | 0.793934 |
Target: 5'- aCGACGCGCauUGAUGcacUCa-UGACGgaGCu -3' miRNA: 3'- -GCUGCGCG--ACUAU---AGgcAUUGCgaCG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 38143 | 0.67 | 0.792919 |
Target: 5'- gGGCGagcCGCUGAcGUCCcgaaggcGUGGCGCgGCu -3' miRNA: 3'- gCUGC---GCGACUaUAGG-------CAUUGCGaCG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 31722 | 0.67 | 0.78371 |
Target: 5'- gCGACGCGCUGAacaaaugGUUCGacggauggacUGACGCa-- -3' miRNA: 3'- -GCUGCGCGACUa------UAGGC----------AUUGCGacg -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 32605 | 0.74 | 0.421892 |
Target: 5'- uCGACGCGUacgaGUAUCgCGUGuccgGCGCUGCc -3' miRNA: 3'- -GCUGCGCGac--UAUAG-GCAU----UGCGACG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 25643 | 0.73 | 0.46242 |
Target: 5'- gGGCaGCGCUGGgcgCCGUAugGCgUGUu -3' miRNA: 3'- gCUG-CGCGACUauaGGCAUugCG-ACG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 4456 | 0.71 | 0.582805 |
Target: 5'- uGGgGCGCacgucuUCCGgcACGCUGCg -3' miRNA: 3'- gCUgCGCGacuau-AGGCauUGCGACG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 41206 | 0.69 | 0.674201 |
Target: 5'- aGAUGCGUcgUGcUAUCCGUAAgGCaguggGCg -3' miRNA: 3'- gCUGCGCG--ACuAUAGGCAUUgCGa----CG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 24491 | 0.69 | 0.675339 |
Target: 5'- uCGACGCGCUGAgcaacgccauaacCCGggGCGCgucgGUu -3' miRNA: 3'- -GCUGCGCGACUaua----------GGCauUGCGa---CG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 14175 | 0.68 | 0.730286 |
Target: 5'- gGGCGCGgcaUGGUGUCCGgcAACGUguggucauccUGCg -3' miRNA: 3'- gCUGCGCg--ACUAUAGGCa-UUGCG----------ACG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 855 | 0.68 | 0.741235 |
Target: 5'- uGACGCGCUGAcccuUCCGguuguaaGCcGCc -3' miRNA: 3'- gCUGCGCGACUau--AGGCauug---CGaCG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 7730 | 0.67 | 0.773315 |
Target: 5'- aCGACGCGUUuGUGUCCG--GCGaagugUGCu -3' miRNA: 3'- -GCUGCGCGAcUAUAGGCauUGCg----ACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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