miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8103 5' -51.5 NC_001978.2 + 31722 0.67 0.78371
Target:  5'- gCGACGCGCUGAacaaaugGUUCGacggauggacUGACGCa-- -3'
miRNA:   3'- -GCUGCGCGACUa------UAGGC----------AUUGCGacg -5'
8103 5' -51.5 NC_001978.2 + 32347 0.68 0.752065
Target:  5'- aCGGCGCGUgaacGUCCGUc-CGCUGg -3'
miRNA:   3'- -GCUGCGCGacuaUAGGCAuuGCGACg -5'
8103 5' -51.5 NC_001978.2 + 15863 0.68 0.741235
Target:  5'- cCGACGgGgUGcccguguUGUUCGUGuaccACGCUGCg -3'
miRNA:   3'- -GCUGCgCgACu------AUAGGCAU----UGCGACG- -5'
8103 5' -51.5 NC_001978.2 + 6048 0.68 0.740145
Target:  5'- uCGGCGCGCUGAaggaAUCgGUAAacgaucuggucagUGCUGa -3'
miRNA:   3'- -GCUGCGCGACUa---UAGgCAUU-------------GCGACg -5'
8103 5' -51.5 NC_001978.2 + 17530 0.7 0.627333
Target:  5'- cCGACGCGCacgcuugcgcaGAUAcacgCCGUcgcccucAGCGCUGCc -3'
miRNA:   3'- -GCUGCGCGa----------CUAUa---GGCA-------UUGCGACG- -5'
8103 5' -51.5 NC_001978.2 + 31304 0.78 0.241369
Target:  5'- cCGACGCGCUGAg--UgGUGACGgUGUg -3'
miRNA:   3'- -GCUGCGCGACUauaGgCAUUGCgACG- -5'
8103 5' -51.5 NC_001978.2 + 34306 0.67 0.773315
Target:  5'- cCGACgGCGCaUGAcgUAUCgCGUuGCGCUcaGCg -3'
miRNA:   3'- -GCUG-CGCG-ACU--AUAG-GCAuUGCGA--CG- -5'
8103 5' -51.5 NC_001978.2 + 2715 0.67 0.773315
Target:  5'- aCGACGCGUguuccUUCGUGAUGC-GCg -3'
miRNA:   3'- -GCUGCGCGacuauAGGCAUUGCGaCG- -5'
8103 5' -51.5 NC_001978.2 + 28723 0.67 0.803975
Target:  5'- -aGCGUGUUGAUGUUCGggugaauACGCccgUGCg -3'
miRNA:   3'- gcUGCGCGACUAUAGGCau-----UGCG---ACG- -5'
8103 5' -51.5 NC_001978.2 + 18824 0.67 0.803975
Target:  5'- cCGACGUGCUGAaggAUUCG--GCGCa-- -3'
miRNA:   3'- -GCUGCGCGACUa--UAGGCauUGCGacg -5'
8103 5' -51.5 NC_001978.2 + 32396 0.67 0.813821
Target:  5'- -aGCGCGCU----UCUGUGACGCcgucuUGCg -3'
miRNA:   3'- gcUGCGCGAcuauAGGCAUUGCG-----ACG- -5'
8103 5' -51.5 NC_001978.2 + 39201 0.66 0.819631
Target:  5'- -cAUGCGCUuacaaagccCCGUGAUGCUGCc -3'
miRNA:   3'- gcUGCGCGAcuaua----GGCAUUGCGACG- -5'
8103 5' -51.5 NC_001978.2 + 23876 0.66 0.868184
Target:  5'- cCGGCGaCGCcGGg--UCG-AGCGCUGCc -3'
miRNA:   3'- -GCUGC-GCGaCUauaGGCaUUGCGACG- -5'
8103 5' -51.5 NC_001978.2 + 8861 0.66 0.868184
Target:  5'- cCGGCGCGCUucGUGUCUcu-GCGCUcaGCc -3'
miRNA:   3'- -GCUGCGCGAc-UAUAGGcauUGCGA--CG- -5'
8103 5' -51.5 NC_001978.2 + 18665 1.12 0.001225
Target:  5'- gCGACGCGCUGAUAUCCGUAACGCUGCc -3'
miRNA:   3'- -GCUGCGCGACUAUAGGCAUUGCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.