Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8103 | 5' | -51.5 | NC_001978.2 | + | 23876 | 0.66 | 0.868184 |
Target: 5'- cCGGCGaCGCcGGg--UCG-AGCGCUGCc -3' miRNA: 3'- -GCUGC-GCGaCUauaGGCaUUGCGACG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 24491 | 0.69 | 0.675339 |
Target: 5'- uCGACGCGCUGAgcaacgccauaacCCGggGCGCgucgGUu -3' miRNA: 3'- -GCUGCGCGACUaua----------GGCauUGCGa---CG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 25643 | 0.73 | 0.46242 |
Target: 5'- gGGCaGCGCUGGgcgCCGUAugGCgUGUu -3' miRNA: 3'- gCUG-CGCGACUauaGGCAUugCG-ACG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 26362 | 0.67 | 0.793934 |
Target: 5'- aCGACGCGCauUGAUGcacUCa-UGACGgaGCu -3' miRNA: 3'- -GCUGCGCG--ACUAU---AGgcAUUGCgaCG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 28723 | 0.67 | 0.803975 |
Target: 5'- -aGCGUGUUGAUGUUCGggugaauACGCccgUGCg -3' miRNA: 3'- gcUGCGCGACUAUAGGCau-----UGCG---ACG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 31304 | 0.78 | 0.241369 |
Target: 5'- cCGACGCGCUGAg--UgGUGACGgUGUg -3' miRNA: 3'- -GCUGCGCGACUauaGgCAUUGCgACG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 31722 | 0.67 | 0.78371 |
Target: 5'- gCGACGCGCUGAacaaaugGUUCGacggauggacUGACGCa-- -3' miRNA: 3'- -GCUGCGCGACUa------UAGGC----------AUUGCGacg -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 32347 | 0.68 | 0.752065 |
Target: 5'- aCGGCGCGUgaacGUCCGUc-CGCUGg -3' miRNA: 3'- -GCUGCGCGacuaUAGGCAuuGCGACg -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 32396 | 0.67 | 0.813821 |
Target: 5'- -aGCGCGCU----UCUGUGACGCcgucuUGCg -3' miRNA: 3'- gcUGCGCGAcuauAGGCAUUGCG-----ACG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 32605 | 0.74 | 0.421892 |
Target: 5'- uCGACGCGUacgaGUAUCgCGUGuccgGCGCUGCc -3' miRNA: 3'- -GCUGCGCGac--UAUAG-GCAU----UGCGACG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 34306 | 0.67 | 0.773315 |
Target: 5'- cCGACgGCGCaUGAcgUAUCgCGUuGCGCUcaGCg -3' miRNA: 3'- -GCUG-CGCG-ACU--AUAG-GCAuUGCGA--CG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 38143 | 0.67 | 0.792919 |
Target: 5'- gGGCGagcCGCUGAcGUCCcgaaggcGUGGCGCgGCu -3' miRNA: 3'- gCUGC---GCGACUaUAGG-------CAUUGCGaCG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 39201 | 0.66 | 0.819631 |
Target: 5'- -cAUGCGCUuacaaagccCCGUGAUGCUGCc -3' miRNA: 3'- gcUGCGCGAcuaua----GGCAUUGCGACG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 41165 | 0.78 | 0.241369 |
Target: 5'- gCGGCGUGCUGcUAUcgcCCGUGggaacaACGCUGCg -3' miRNA: 3'- -GCUGCGCGACuAUA---GGCAU------UGCGACG- -5' |
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8103 | 5' | -51.5 | NC_001978.2 | + | 41206 | 0.69 | 0.674201 |
Target: 5'- aGAUGCGUcgUGcUAUCCGUAAgGCaguggGCg -3' miRNA: 3'- gCUGCGCG--ACuAUAGGCAUUgCGa----CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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