miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8103 5' -51.5 NC_001978.2 + 855 0.68 0.741235
Target:  5'- uGACGCGCUGAcccuUCCGguuguaaGCcGCc -3'
miRNA:   3'- gCUGCGCGACUau--AGGCauug---CGaCG- -5'
8103 5' -51.5 NC_001978.2 + 2715 0.67 0.773315
Target:  5'- aCGACGCGUguuccUUCGUGAUGC-GCg -3'
miRNA:   3'- -GCUGCGCGacuauAGGCAUUGCGaCG- -5'
8103 5' -51.5 NC_001978.2 + 3136 0.66 0.822506
Target:  5'- uGACGCcggaaugGCUcGAcUAUCCG-AACGCUGa -3'
miRNA:   3'- gCUGCG-------CGA-CU-AUAGGCaUUGCGACg -5'
8103 5' -51.5 NC_001978.2 + 4456 0.71 0.582805
Target:  5'- uGGgGCGCacgucuUCCGgcACGCUGCg -3'
miRNA:   3'- gCUgCGCGacuau-AGGCauUGCGACG- -5'
8103 5' -51.5 NC_001978.2 + 5678 0.67 0.807938
Target:  5'- cCGACGCGCUGAUugAUcucuuccaugaggucCCGUcGGCGUaccGCa -3'
miRNA:   3'- -GCUGCGCGACUA--UA---------------GGCA-UUGCGa--CG- -5'
8103 5' -51.5 NC_001978.2 + 6048 0.68 0.740145
Target:  5'- uCGGCGCGCUGAaggaAUCgGUAAacgaucuggucagUGCUGa -3'
miRNA:   3'- -GCUGCGCGACUa---UAGgCAUU-------------GCGACg -5'
8103 5' -51.5 NC_001978.2 + 7730 0.67 0.773315
Target:  5'- aCGACGCGUUuGUGUCCG--GCGaagugUGCu -3'
miRNA:   3'- -GCUGCGCGAcUAUAGGCauUGCg----ACG- -5'
8103 5' -51.5 NC_001978.2 + 8861 0.66 0.868184
Target:  5'- cCGGCGCGCUucGUGUCUcu-GCGCUcaGCc -3'
miRNA:   3'- -GCUGCGCGAc-UAUAGGcauUGCGA--CG- -5'
8103 5' -51.5 NC_001978.2 + 11025 0.66 0.859736
Target:  5'- gGGCGCGaa-GUcgCCugGGCGCUGCg -3'
miRNA:   3'- gCUGCGCgacUAuaGGcaUUGCGACG- -5'
8103 5' -51.5 NC_001978.2 + 13964 0.66 0.868184
Target:  5'- uCGACGuCGUUGAUGagaaCGgcACGgaGCu -3'
miRNA:   3'- -GCUGC-GCGACUAUag--GCauUGCgaCG- -5'
8103 5' -51.5 NC_001978.2 + 14175 0.68 0.730286
Target:  5'- gGGCGCGgcaUGGUGUCCGgcAACGUguggucauccUGCg -3'
miRNA:   3'- gCUGCGCg--ACUAUAGGCa-UUGCG----------ACG- -5'
8103 5' -51.5 NC_001978.2 + 15423 0.66 0.858015
Target:  5'- uGGCGCGCgcaccuauUCCaUggUGCUGCc -3'
miRNA:   3'- gCUGCGCGacuau---AGGcAuuGCGACG- -5'
8103 5' -51.5 NC_001978.2 + 15863 0.68 0.741235
Target:  5'- cCGACGgGgUGcccguguUGUUCGUGuaccACGCUGCg -3'
miRNA:   3'- -GCUGCgCgACu------AUAGGCAU----UGCGACG- -5'
8103 5' -51.5 NC_001978.2 + 17530 0.7 0.627333
Target:  5'- cCGACGCGCacgcuugcgcaGAUAcacgCCGUcgcccucAGCGCUGCc -3'
miRNA:   3'- -GCUGCGCGa----------CUAUa---GGCA-------UUGCGACG- -5'
8103 5' -51.5 NC_001978.2 + 18148 0.66 0.859736
Target:  5'- gGACGCGCUGAagGUCCcgAAgGuCUGa -3'
miRNA:   3'- gCUGCGCGACUa-UAGGcaUUgC-GACg -5'
8103 5' -51.5 NC_001978.2 + 18555 0.66 0.868184
Target:  5'- gGGCGCGCUcagucgggcaagGAU-UCCGUcggGGCGCgucuccgGCa -3'
miRNA:   3'- gCUGCGCGA------------CUAuAGGCA---UUGCGa------CG- -5'
8103 5' -51.5 NC_001978.2 + 18665 1.12 0.001225
Target:  5'- gCGACGCGCUGAUAUCCGUAACGCUGCc -3'
miRNA:   3'- -GCUGCGCGACUAUAGGCAUUGCGACG- -5'
8103 5' -51.5 NC_001978.2 + 18824 0.67 0.803975
Target:  5'- cCGACGUGCUGAaggAUUCG--GCGCa-- -3'
miRNA:   3'- -GCUGCGCGACUa--UAGGCauUGCGacg -5'
8103 5' -51.5 NC_001978.2 + 18952 0.66 0.842076
Target:  5'- cCGGCaCGCUGAg--CCG-GACGC-GCa -3'
miRNA:   3'- -GCUGcGCGACUauaGGCaUUGCGaCG- -5'
8103 5' -51.5 NC_001978.2 + 23644 0.67 0.813821
Target:  5'- aGACGaCGUUGAgcgcGUCggcaaggGUGGCGCUGUg -3'
miRNA:   3'- gCUGC-GCGACUa---UAGg------CAUUGCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.