miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8103 5' -51.5 NC_001978.2 + 41206 0.69 0.674201
Target:  5'- aGAUGCGUcgUGcUAUCCGUAAgGCaguggGCg -3'
miRNA:   3'- gCUGCGCG--ACuAUAGGCAUUgCGa----CG- -5'
8103 5' -51.5 NC_001978.2 + 41165 0.78 0.241369
Target:  5'- gCGGCGUGCUGcUAUcgcCCGUGggaacaACGCUGCg -3'
miRNA:   3'- -GCUGCGCGACuAUA---GGCAU------UGCGACG- -5'
8103 5' -51.5 NC_001978.2 + 39201 0.66 0.819631
Target:  5'- -cAUGCGCUuacaaagccCCGUGAUGCUGCc -3'
miRNA:   3'- gcUGCGCGAcuaua----GGCAUUGCGACG- -5'
8103 5' -51.5 NC_001978.2 + 38143 0.67 0.792919
Target:  5'- gGGCGagcCGCUGAcGUCCcgaaggcGUGGCGCgGCu -3'
miRNA:   3'- gCUGC---GCGACUaUAGG-------CAUUGCGaCG- -5'
8103 5' -51.5 NC_001978.2 + 34306 0.67 0.773315
Target:  5'- cCGACgGCGCaUGAcgUAUCgCGUuGCGCUcaGCg -3'
miRNA:   3'- -GCUG-CGCG-ACU--AUAG-GCAuUGCGA--CG- -5'
8103 5' -51.5 NC_001978.2 + 32605 0.74 0.421892
Target:  5'- uCGACGCGUacgaGUAUCgCGUGuccgGCGCUGCc -3'
miRNA:   3'- -GCUGCGCGac--UAUAG-GCAU----UGCGACG- -5'
8103 5' -51.5 NC_001978.2 + 32396 0.67 0.813821
Target:  5'- -aGCGCGCU----UCUGUGACGCcgucuUGCg -3'
miRNA:   3'- gcUGCGCGAcuauAGGCAUUGCG-----ACG- -5'
8103 5' -51.5 NC_001978.2 + 32347 0.68 0.752065
Target:  5'- aCGGCGCGUgaacGUCCGUc-CGCUGg -3'
miRNA:   3'- -GCUGCGCGacuaUAGGCAuuGCGACg -5'
8103 5' -51.5 NC_001978.2 + 31722 0.67 0.78371
Target:  5'- gCGACGCGCUGAacaaaugGUUCGacggauggacUGACGCa-- -3'
miRNA:   3'- -GCUGCGCGACUa------UAGGC----------AUUGCGacg -5'
8103 5' -51.5 NC_001978.2 + 31304 0.78 0.241369
Target:  5'- cCGACGCGCUGAg--UgGUGACGgUGUg -3'
miRNA:   3'- -GCUGCGCGACUauaGgCAUUGCgACG- -5'
8103 5' -51.5 NC_001978.2 + 28723 0.67 0.803975
Target:  5'- -aGCGUGUUGAUGUUCGggugaauACGCccgUGCg -3'
miRNA:   3'- gcUGCGCGACUAUAGGCau-----UGCG---ACG- -5'
8103 5' -51.5 NC_001978.2 + 26362 0.67 0.793934
Target:  5'- aCGACGCGCauUGAUGcacUCa-UGACGgaGCu -3'
miRNA:   3'- -GCUGCGCG--ACUAU---AGgcAUUGCgaCG- -5'
8103 5' -51.5 NC_001978.2 + 25643 0.73 0.46242
Target:  5'- gGGCaGCGCUGGgcgCCGUAugGCgUGUu -3'
miRNA:   3'- gCUG-CGCGACUauaGGCAUugCG-ACG- -5'
8103 5' -51.5 NC_001978.2 + 24491 0.69 0.675339
Target:  5'- uCGACGCGCUGAgcaacgccauaacCCGggGCGCgucgGUu -3'
miRNA:   3'- -GCUGCGCGACUaua----------GGCauUGCGa---CG- -5'
8103 5' -51.5 NC_001978.2 + 23876 0.66 0.868184
Target:  5'- cCGGCGaCGCcGGg--UCG-AGCGCUGCc -3'
miRNA:   3'- -GCUGC-GCGaCUauaGGCaUUGCGACG- -5'
8103 5' -51.5 NC_001978.2 + 23644 0.67 0.813821
Target:  5'- aGACGaCGUUGAgcgcGUCggcaaggGUGGCGCUGUg -3'
miRNA:   3'- gCUGC-GCGACUa---UAGg------CAUUGCGACG- -5'
8103 5' -51.5 NC_001978.2 + 18952 0.66 0.842076
Target:  5'- cCGGCaCGCUGAg--CCG-GACGC-GCa -3'
miRNA:   3'- -GCUGcGCGACUauaGGCaUUGCGaCG- -5'
8103 5' -51.5 NC_001978.2 + 18824 0.67 0.803975
Target:  5'- cCGACGUGCUGAaggAUUCG--GCGCa-- -3'
miRNA:   3'- -GCUGCGCGACUa--UAGGCauUGCGacg -5'
8103 5' -51.5 NC_001978.2 + 18665 1.12 0.001225
Target:  5'- gCGACGCGCUGAUAUCCGUAACGCUGCc -3'
miRNA:   3'- -GCUGCGCGACUAUAGGCAUUGCGACG- -5'
8103 5' -51.5 NC_001978.2 + 18555 0.66 0.868184
Target:  5'- gGGCGCGCUcagucgggcaagGAU-UCCGUcggGGCGCgucuccgGCa -3'
miRNA:   3'- gCUGCGCGA------------CUAuAGGCA---UUGCGa------CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.