miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8103 5' -51.5 NC_001978.2 + 7730 0.67 0.773315
Target:  5'- aCGACGCGUUuGUGUCCG--GCGaagugUGCu -3'
miRNA:   3'- -GCUGCGCGAcUAUAGGCauUGCg----ACG- -5'
8103 5' -51.5 NC_001978.2 + 32347 0.68 0.752065
Target:  5'- aCGGCGCGUgaacGUCCGUc-CGCUGg -3'
miRNA:   3'- -GCUGCGCGacuaUAGGCAuuGCGACg -5'
8103 5' -51.5 NC_001978.2 + 15863 0.68 0.741235
Target:  5'- cCGACGgGgUGcccguguUGUUCGUGuaccACGCUGCg -3'
miRNA:   3'- -GCUGCgCgACu------AUAGGCAU----UGCGACG- -5'
8103 5' -51.5 NC_001978.2 + 855 0.68 0.741235
Target:  5'- uGACGCGCUGAcccuUCCGguuguaaGCcGCc -3'
miRNA:   3'- gCUGCGCGACUau--AGGCauug---CGaCG- -5'
8103 5' -51.5 NC_001978.2 + 6048 0.68 0.740145
Target:  5'- uCGGCGCGCUGAaggaAUCgGUAAacgaucuggucagUGCUGa -3'
miRNA:   3'- -GCUGCGCGACUa---UAGgCAUU-------------GCGACg -5'
8103 5' -51.5 NC_001978.2 + 14175 0.68 0.730286
Target:  5'- gGGCGCGgcaUGGUGUCCGgcAACGUguggucauccUGCg -3'
miRNA:   3'- gCUGCGCg--ACUAUAGGCa-UUGCG----------ACG- -5'
8103 5' -51.5 NC_001978.2 + 24491 0.69 0.675339
Target:  5'- uCGACGCGCUGAgcaacgccauaacCCGggGCGCgucgGUu -3'
miRNA:   3'- -GCUGCGCGACUaua----------GGCauUGCGa---CG- -5'
8103 5' -51.5 NC_001978.2 + 41206 0.69 0.674201
Target:  5'- aGAUGCGUcgUGcUAUCCGUAAgGCaguggGCg -3'
miRNA:   3'- gCUGCGCG--ACuAUAGGCAUUgCGa----CG- -5'
8103 5' -51.5 NC_001978.2 + 17530 0.7 0.627333
Target:  5'- cCGACGCGCacgcuugcgcaGAUAcacgCCGUcgcccucAGCGCUGCc -3'
miRNA:   3'- -GCUGCGCGa----------CUAUa---GGCA-------UUGCGACG- -5'
8103 5' -51.5 NC_001978.2 + 4456 0.71 0.582805
Target:  5'- uGGgGCGCacgucuUCCGgcACGCUGCg -3'
miRNA:   3'- gCUgCGCGacuau-AGGCauUGCGACG- -5'
8103 5' -51.5 NC_001978.2 + 25643 0.73 0.46242
Target:  5'- gGGCaGCGCUGGgcgCCGUAugGCgUGUu -3'
miRNA:   3'- gCUG-CGCGACUauaGGCAUugCG-ACG- -5'
8103 5' -51.5 NC_001978.2 + 32605 0.74 0.421892
Target:  5'- uCGACGCGUacgaGUAUCgCGUGuccgGCGCUGCc -3'
miRNA:   3'- -GCUGCGCGac--UAUAG-GCAU----UGCGACG- -5'
8103 5' -51.5 NC_001978.2 + 31304 0.78 0.241369
Target:  5'- cCGACGCGCUGAg--UgGUGACGgUGUg -3'
miRNA:   3'- -GCUGCGCGACUauaGgCAUUGCgACG- -5'
8103 5' -51.5 NC_001978.2 + 41165 0.78 0.241369
Target:  5'- gCGGCGUGCUGcUAUcgcCCGUGggaacaACGCUGCg -3'
miRNA:   3'- -GCUGCGCGACuAUA---GGCAU------UGCGACG- -5'
8103 5' -51.5 NC_001978.2 + 18665 1.12 0.001225
Target:  5'- gCGACGCGCUGAUAUCCGUAACGCUGCc -3'
miRNA:   3'- -GCUGCGCGACUAUAGGCAUUGCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.