miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8111 3' -52.3 NC_001978.2 + 28227 0.67 0.748367
Target:  5'- gAUCACGUCGAGC---CCGGCGUaaaGGUUg -3'
miRNA:   3'- -UGGUGUAGCUUGcuaGGCCGUA---UCGG- -5'
8111 3' -52.3 NC_001978.2 + 16115 0.67 0.744046
Target:  5'- uGCCgACGUCGGGgcgauucccguugcCGAcaagggaguugcgUCCGGCGUuGCCa -3'
miRNA:   3'- -UGG-UGUAGCUU--------------GCU-------------AGGCCGUAuCGG- -5'
8111 3' -52.3 NC_001978.2 + 19569 0.67 0.737527
Target:  5'- uCCGUGUCGAACG-UCCGGCcgugaagGGUCa -3'
miRNA:   3'- uGGUGUAGCUUGCuAGGCCGua-----UCGG- -5'
8111 3' -52.3 NC_001978.2 + 25962 0.68 0.715516
Target:  5'- -aCGCGUCGAuacCGugcCCGGCA-AGCCc -3'
miRNA:   3'- ugGUGUAGCUu--GCua-GGCCGUaUCGG- -5'
8111 3' -52.3 NC_001978.2 + 38251 0.68 0.715516
Target:  5'- cCCACccaGGGCGAuugcUCCGGCAcggggaAGCCg -3'
miRNA:   3'- uGGUGuagCUUGCU----AGGCCGUa-----UCGG- -5'
8111 3' -52.3 NC_001978.2 + 25418 0.68 0.681866
Target:  5'- aGCCACAUgCGAAguCGGguuaCCGGCGc-GCCa -3'
miRNA:   3'- -UGGUGUA-GCUU--GCUa---GGCCGUauCGG- -5'
8111 3' -52.3 NC_001978.2 + 33106 0.69 0.66371
Target:  5'- -gCGCA-CGGGCGGcuucgcgggcuugcuUCCGGCcGUAGCCc -3'
miRNA:   3'- ugGUGUaGCUUGCU---------------AGGCCG-UAUCGG- -5'
8111 3' -52.3 NC_001978.2 + 37786 0.69 0.636339
Target:  5'- uGCCGC-UCGAAUGGgucacCCaGCAUGGCg -3'
miRNA:   3'- -UGGUGuAGCUUGCUa----GGcCGUAUCGg -5'
8111 3' -52.3 NC_001978.2 + 17758 0.69 0.636339
Target:  5'- -aCGCGUacaaGGACGGUCCGG---GGCCg -3'
miRNA:   3'- ugGUGUAg---CUUGCUAGGCCguaUCGG- -5'
8111 3' -52.3 NC_001978.2 + 11922 0.69 0.624918
Target:  5'- gGCCACGUCGAGCcGUCa-GCGauaAGCCc -3'
miRNA:   3'- -UGGUGUAGCUUGcUAGgcCGUa--UCGG- -5'
8111 3' -52.3 NC_001978.2 + 9297 0.69 0.602108
Target:  5'- gGCCgACGUCGAAUgccguugggcaGAUgcucaaaaCCGGCAUGGCg -3'
miRNA:   3'- -UGG-UGUAGCUUG-----------CUA--------GGCCGUAUCGg -5'
8111 3' -52.3 NC_001978.2 + 2458 0.69 0.602108
Target:  5'- -aCACGUCGAGCG--CCGuGUGUAGCUc -3'
miRNA:   3'- ugGUGUAGCUUGCuaGGC-CGUAUCGG- -5'
8111 3' -52.3 NC_001978.2 + 4150 0.7 0.590739
Target:  5'- cCCAgcCAUUGAGCc-UCCGGCGgaagAGCCg -3'
miRNA:   3'- uGGU--GUAGCUUGcuAGGCCGUa---UCGG- -5'
8111 3' -52.3 NC_001978.2 + 7935 0.7 0.590739
Target:  5'- -gUACGUCGAGCccgGAacgCCGGUcgAGCCg -3'
miRNA:   3'- ugGUGUAGCUUG---CUa--GGCCGuaUCGG- -5'
8111 3' -52.3 NC_001978.2 + 38125 0.71 0.534641
Target:  5'- gACCGCGaacgccauUCGAGCGucaCCGGCuc-GCCg -3'
miRNA:   3'- -UGGUGU--------AGCUUGCua-GGCCGuauCGG- -5'
8111 3' -52.3 NC_001978.2 + 30466 0.71 0.512709
Target:  5'- gACCuuGUCGAGCGAcaCGGCAcccuGCCa -3'
miRNA:   3'- -UGGugUAGCUUGCUagGCCGUau--CGG- -5'
8111 3' -52.3 NC_001978.2 + 23645 0.71 0.512709
Target:  5'- gACgACGUUGAGCGcgUCGGCAagggUGGCg -3'
miRNA:   3'- -UGgUGUAGCUUGCuaGGCCGU----AUCGg -5'
8111 3' -52.3 NC_001978.2 + 11651 0.71 0.501882
Target:  5'- gACCgGCGcCGGACGAcCCGGUA-AGCCg -3'
miRNA:   3'- -UGG-UGUaGCUUGCUaGGCCGUaUCGG- -5'
8111 3' -52.3 NC_001978.2 + 40639 0.72 0.480537
Target:  5'- cCCAgGgUUGAGCGA-CCGGCGUuGCCu -3'
miRNA:   3'- uGGUgU-AGCUUGCUaGGCCGUAuCGG- -5'
8111 3' -52.3 NC_001978.2 + 1047 0.72 0.439245
Target:  5'- gGCCAUGUCGAGCGuguaguaacCCGGCGU-GCg -3'
miRNA:   3'- -UGGUGUAGCUUGCua-------GGCCGUAuCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.