miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8111 5' -56.8 NC_001978.2 + 13433 0.71 0.329581
Target:  5'- uCCGuGCCaAUGCCGcCGUCUUCGuugcacaGCGCGUa -3'
miRNA:   3'- -GGC-UGG-UGCGGU-GUAGAAGC-------CGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 20503 0.7 0.336016
Target:  5'- gUCGGgCACGCCuucaaugucguugaaGUCUUCGGCGaCGUc -3'
miRNA:   3'- -GGCUgGUGCGGug-------------UAGAAGCCGC-GCG- -5'
8111 5' -56.8 NC_001978.2 + 36345 0.7 0.338453
Target:  5'- aCGACgACGCC-CuUCgUCaGCGCGCa -3'
miRNA:   3'- gGCUGgUGCGGuGuAGaAGcCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 23705 0.7 0.338453
Target:  5'- gCCGA-CGCGCUcaacguCGUCUUCGGCuucGUGCa -3'
miRNA:   3'- -GGCUgGUGCGGu-----GUAGAAGCCG---CGCG- -5'
8111 5' -56.8 NC_001978.2 + 3743 0.7 0.363524
Target:  5'- uCCGGaaaUCGCGCga-AUCUUUGGCGUGCc -3'
miRNA:   3'- -GGCU---GGUGCGgugUAGAAGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 22225 0.7 0.363524
Target:  5'- aCGGCUAUGCCGgAUCgUUCGauguggucauGCGCGUa -3'
miRNA:   3'- gGCUGGUGCGGUgUAG-AAGC----------CGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 23877 0.7 0.373033
Target:  5'- uCCGGCgACGCCGgGUCgagcgcugccacuagUCGGCaauCGCg -3'
miRNA:   3'- -GGCUGgUGCGGUgUAGa--------------AGCCGc--GCG- -5'
8111 5' -56.8 NC_001978.2 + 24573 0.7 0.380938
Target:  5'- gUCGGCgGCGUCAUgGUCggcauaugugUCGGCGUGCu -3'
miRNA:   3'- -GGCUGgUGCGGUG-UAGa---------AGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 709 0.7 0.380938
Target:  5'- gCCGugUACGCCGCGU--UCaGCaaGCGCu -3'
miRNA:   3'- -GGCugGUGCGGUGUAgaAGcCG--CGCG- -5'
8111 5' -56.8 NC_001978.2 + 36433 0.7 0.380938
Target:  5'- gCCgGACCAUGCC-CAUUcgCuGUGCGCg -3'
miRNA:   3'- -GG-CUGGUGCGGuGUAGaaGcCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 20460 0.7 0.380938
Target:  5'- gCCGACCgGCGCgACucgaCUUCGGCcuuCGCc -3'
miRNA:   3'- -GGCUGG-UGCGgUGua--GAAGCCGc--GCG- -5'
8111 5' -56.8 NC_001978.2 + 6342 0.69 0.426839
Target:  5'- cUCGACCACGUgucgCGCAUUcccgaUCGG-GCGCu -3'
miRNA:   3'- -GGCUGGUGCG----GUGUAGa----AGCCgCGCG- -5'
8111 5' -56.8 NC_001978.2 + 11527 0.69 0.426839
Target:  5'- gCGACguCGCCuuACAUCgUgGGCGaCGCu -3'
miRNA:   3'- gGCUGguGCGG--UGUAGaAgCCGC-GCG- -5'
8111 5' -56.8 NC_001978.2 + 39835 0.69 0.436407
Target:  5'- -aGACCGCGCgGCA-----GGCGCGUa -3'
miRNA:   3'- ggCUGGUGCGgUGUagaagCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 25397 0.69 0.436407
Target:  5'- aCCGG-CGCGCCACuuaccAUCUUCGGCu--- -3'
miRNA:   3'- -GGCUgGUGCGGUG-----UAGAAGCCGcgcg -5'
8111 5' -56.8 NC_001978.2 + 12032 0.69 0.436407
Target:  5'- gCCGACuggCAgGUgAUcgCUaCGGCGCGCg -3'
miRNA:   3'- -GGCUG---GUgCGgUGuaGAaGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 31228 0.69 0.436407
Target:  5'- uCCGACCG-GCCACAccgucaccacUCagcgcgUCGGCGC-Ca -3'
miRNA:   3'- -GGCUGGUgCGGUGU----------AGa-----AGCCGCGcG- -5'
8111 5' -56.8 NC_001978.2 + 31353 0.69 0.436407
Target:  5'- gCUGAUCACGUCGCcg--UCGGCGUugGCc -3'
miRNA:   3'- -GGCUGGUGCGGUGuagaAGCCGCG--CG- -5'
8111 5' -56.8 NC_001978.2 + 15504 0.69 0.440268
Target:  5'- cCCGACUACGCCgACGUacgUUGccgucccgggucccaGCGCGUa -3'
miRNA:   3'- -GGCUGGUGCGG-UGUAga-AGC---------------CGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 1620 0.68 0.446097
Target:  5'- gCCG-CCAaCGaCCGCaAUCa--GGCGCGCa -3'
miRNA:   3'- -GGCuGGU-GC-GGUG-UAGaagCCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.