miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8117 3' -56 NC_001978.2 + 24380 1.09 0.000645
Target:  5'- gCUGAACGACGACAAGCCCCGGCACGAa -3'
miRNA:   3'- -GACUUGCUGCUGUUCGGGGCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 17243 0.84 0.046038
Target:  5'- cCUGAuucuGCGACcacuCAAGCCCCGGCACGGc -3'
miRNA:   3'- -GACU----UGCUGcu--GUUCGGGGCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 4810 0.78 0.113306
Target:  5'- -cGGACGGCGACGuuGCCCCGGCuucucauuuCGAc -3'
miRNA:   3'- gaCUUGCUGCUGUu-CGGGGCCGu--------GCU- -5'
8117 3' -56 NC_001978.2 + 25489 0.75 0.187111
Target:  5'- cCUGGGCGACGuCGAGCCcgaaCCGGUcgGCGGc -3'
miRNA:   3'- -GACUUGCUGCuGUUCGG----GGCCG--UGCU- -5'
8117 3' -56 NC_001978.2 + 20481 0.75 0.197534
Target:  5'- uUGAAgucuuCGGCGACGucGGCCgaCCGGCGCGAc -3'
miRNA:   3'- gACUU-----GCUGCUGU--UCGG--GGCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 36789 0.74 0.225824
Target:  5'- cCUGAGCcggagccugccGACGACGAcGUUCCGGCGCGu -3'
miRNA:   3'- -GACUUG-----------CUGCUGUU-CGGGGCCGUGCu -5'
8117 3' -56 NC_001978.2 + 13953 0.74 0.225824
Target:  5'- cCUGAACGACGcCcgAAGCuCCCGGaACGAa -3'
miRNA:   3'- -GACUUGCUGCuG--UUCG-GGGCCgUGCU- -5'
8117 3' -56 NC_001978.2 + 12111 0.73 0.240584
Target:  5'- -cGAAUcaGACGGCGcgcacgguugcggucGGCUCCGGCACGGu -3'
miRNA:   3'- gaCUUG--CUGCUGU---------------UCGGGGCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 36156 0.73 0.264225
Target:  5'- uUGAGCGGCGGCAacgguugguucuAGUCCCGGguUGc -3'
miRNA:   3'- gACUUGCUGCUGU------------UCGGGGCCguGCu -5'
8117 3' -56 NC_001978.2 + 33006 0.73 0.264225
Target:  5'- cCUGAACGGCuucuCAAGCUCCGuGcCGCGAa -3'
miRNA:   3'- -GACUUGCUGcu--GUUCGGGGC-C-GUGCU- -5'
8117 3' -56 NC_001978.2 + 35166 0.72 0.285336
Target:  5'- uCUGAGuuCGcCGuCAGcGCCCCGGUACGAc -3'
miRNA:   3'- -GACUU--GCuGCuGUU-CGGGGCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 35809 0.72 0.291186
Target:  5'- gCUGGGCGACGGCGuuGCCaagggcuucgcaUGGCGCGGc -3'
miRNA:   3'- -GACUUGCUGCUGUu-CGGg-----------GCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 40173 0.72 0.291924
Target:  5'- --cGACGACGACGAagacgacGCCCaggaCGGCACGGa -3'
miRNA:   3'- gacUUGCUGCUGUU-------CGGG----GCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 19946 0.71 0.34806
Target:  5'- -gGAGCG-CGugAaucgcgucGGcCCCCGGCACGGc -3'
miRNA:   3'- gaCUUGCuGCugU--------UC-GGGGCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 38346 0.7 0.35656
Target:  5'- cCUGGGaaaACGugAAGCCCCGGgGCa- -3'
miRNA:   3'- -GACUUgc-UGCugUUCGGGGCCgUGcu -5'
8117 3' -56 NC_001978.2 + 430 0.7 0.365205
Target:  5'- aUGAGCGACaACAGGU--CGGCGCGAc -3'
miRNA:   3'- gACUUGCUGcUGUUCGggGCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 25305 0.7 0.365205
Target:  5'- -gGAGCuGACGACGucGCCcgugucacaaCCGGCACGGc -3'
miRNA:   3'- gaCUUG-CUGCUGUu-CGG----------GGCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 35701 0.7 0.382924
Target:  5'- gCUGGGCGcUGuACAAGCCaCUGGgGCGAu -3'
miRNA:   3'- -GACUUGCuGC-UGUUCGG-GGCCgUGCU- -5'
8117 3' -56 NC_001978.2 + 36860 0.7 0.401205
Target:  5'- -gGAACGucgucguCGGCAGGCUCCGGCucaGGc -3'
miRNA:   3'- gaCUUGCu------GCUGUUCGGGGCCGug-CU- -5'
8117 3' -56 NC_001978.2 + 6647 0.7 0.404927
Target:  5'- --aGACGACGACcuuGcccccguggcuaugcGCUCCGGCGCGAa -3'
miRNA:   3'- gacUUGCUGCUGu--U---------------CGGGGCCGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.