miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8117 3' -56 NC_001978.2 + 19634 0.66 0.597696
Target:  5'- -aGGACGGCGACAAGgucagcgaCCCGcGCAagGAc -3'
miRNA:   3'- gaCUUGCUGCUGUUCg-------GGGC-CGUg-CU- -5'
8117 3' -56 NC_001978.2 + 35571 0.68 0.5003
Target:  5'- -cGAGCcggaGACGGCGccccugAGCgUCGGCGCGAc -3'
miRNA:   3'- gaCUUG----CUGCUGU------UCGgGGCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 15923 0.68 0.510822
Target:  5'- -cGAAgGGCGACAagGGCgacaCgGGCGCGAc -3'
miRNA:   3'- gaCUUgCUGCUGU--UCGg---GgCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 2575 0.67 0.521435
Target:  5'- aCUGAgccACGACGGCAA-CCCggcguuggguCGGCACa- -3'
miRNA:   3'- -GACU---UGCUGCUGUUcGGG----------GCCGUGcu -5'
8117 3' -56 NC_001978.2 + 30470 0.67 0.553755
Target:  5'- gCUGAagcacuACGACGAaGAGCCCgaCGGCGaGAu -3'
miRNA:   3'- -GACU------UGCUGCUgUUCGGG--GCCGUgCU- -5'
8117 3' -56 NC_001978.2 + 20470 0.67 0.564665
Target:  5'- -aGGACGGCGuCAAGCUCUucucucagGGCGuCGAc -3'
miRNA:   3'- gaCUUGCUGCuGUUCGGGG--------CCGU-GCU- -5'
8117 3' -56 NC_001978.2 + 29092 0.66 0.583336
Target:  5'- -cGGGCGucgucgcguuggcaGCGugAAGCgCgCGGCACGGg -3'
miRNA:   3'- gaCUUGC--------------UGCugUUCGgG-GCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 24405 0.66 0.585541
Target:  5'- cCUGGGCGACGuGCGAGCgcugaagCCgGGCgacACGGu -3'
miRNA:   3'- -GACUUGCUGC-UGUUCG-------GGgCCG---UGCU- -5'
8117 3' -56 NC_001978.2 + 13675 0.66 0.597696
Target:  5'- --cGGCGcCGACAacGGCaaCGGCACGAa -3'
miRNA:   3'- gacUUGCuGCUGU--UCGggGCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 34648 0.68 0.489875
Target:  5'- --cGACGcCGACuGAGCCCCguugcacccGGCACGGu -3'
miRNA:   3'- gacUUGCuGCUG-UUCGGGG---------CCGUGCU- -5'
8117 3' -56 NC_001978.2 + 32150 0.68 0.469337
Target:  5'- gCUGAACGAgGA--AGCCgaCCGGgGCGGa -3'
miRNA:   3'- -GACUUGCUgCUguUCGG--GGCCgUGCU- -5'
8117 3' -56 NC_001978.2 + 24276 0.68 0.469337
Target:  5'- gCUGAACaGAC-ACAcGCCCCGG-GCGGa -3'
miRNA:   3'- -GACUUG-CUGcUGUuCGGGGCCgUGCU- -5'
8117 3' -56 NC_001978.2 + 36789 0.74 0.225824
Target:  5'- cCUGAGCcggagccugccGACGACGAcGUUCCGGCGCGu -3'
miRNA:   3'- -GACUUG-----------CUGCUGUU-CGGGGCCGUGCu -5'
8117 3' -56 NC_001978.2 + 12111 0.73 0.240584
Target:  5'- -cGAAUcaGACGGCGcgcacgguugcggucGGCUCCGGCACGGu -3'
miRNA:   3'- gaCUUG--CUGCUGU---------------UCGGGGCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 36156 0.73 0.264225
Target:  5'- uUGAGCGGCGGCAacgguugguucuAGUCCCGGguUGc -3'
miRNA:   3'- gACUUGCUGCUGU------------UCGGGGCCguGCu -5'
8117 3' -56 NC_001978.2 + 35166 0.72 0.285336
Target:  5'- uCUGAGuuCGcCGuCAGcGCCCCGGUACGAc -3'
miRNA:   3'- -GACUU--GCuGCuGUU-CGGGGCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 40173 0.72 0.291924
Target:  5'- --cGACGACGACGAagacgacGCCCaggaCGGCACGGa -3'
miRNA:   3'- gacUUGCUGCUGUU-------CGGG----GCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 6647 0.7 0.404927
Target:  5'- --aGACGACGACcuuGcccccguggcuaugcGCUCCGGCGCGAa -3'
miRNA:   3'- gacUUGCUGCUGu--U---------------CGGGGCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 31085 0.69 0.439384
Target:  5'- gCUGAGCGACuGACGAaCgCCgGGCGCa- -3'
miRNA:   3'- -GACUUGCUG-CUGUUcG-GGgCCGUGcu -5'
8117 3' -56 NC_001978.2 + 19576 0.68 0.459235
Target:  5'- gUGGACGAaGACGGGCagcgcaaCGGCACGu -3'
miRNA:   3'- gACUUGCUgCUGUUCGgg-----GCCGUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.