miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8117 3' -56 NC_001978.2 + 35166 0.72 0.285336
Target:  5'- uCUGAGuuCGcCGuCAGcGCCCCGGUACGAc -3'
miRNA:   3'- -GACUU--GCuGCuGUU-CGGGGCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 40173 0.72 0.291924
Target:  5'- --cGACGACGACGAagacgacGCCCaggaCGGCACGGa -3'
miRNA:   3'- gacUUGCUGCUGUU-------CGGG----GCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 6647 0.7 0.404927
Target:  5'- --aGACGACGACcuuGcccccguggcuaugcGCUCCGGCGCGAa -3'
miRNA:   3'- gacUUGCUGCUGu--U---------------CGGGGCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 31085 0.69 0.439384
Target:  5'- gCUGAGCGACuGACGAaCgCCgGGCGCa- -3'
miRNA:   3'- -GACUUGCUG-CUGUUcG-GGgCCGUGcu -5'
8117 3' -56 NC_001978.2 + 35571 0.68 0.5003
Target:  5'- -cGAGCcggaGACGGCGccccugAGCgUCGGCGCGAc -3'
miRNA:   3'- gaCUUG----CUGCUGU------UCGgGGCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 34648 0.68 0.489875
Target:  5'- --cGACGcCGACuGAGCCCCguugcacccGGCACGGu -3'
miRNA:   3'- gacUUGCuGCUG-UUCGGGG---------CCGUGCU- -5'
8117 3' -56 NC_001978.2 + 32150 0.68 0.469337
Target:  5'- gCUGAACGAgGA--AGCCgaCCGGgGCGGa -3'
miRNA:   3'- -GACUUGCUgCUguUCGG--GGCCgUGCU- -5'
8117 3' -56 NC_001978.2 + 24276 0.68 0.469337
Target:  5'- gCUGAACaGAC-ACAcGCCCCGG-GCGGa -3'
miRNA:   3'- -GACUUG-CUGcUGUuCGGGGCCgUGCU- -5'
8117 3' -56 NC_001978.2 + 19576 0.68 0.459235
Target:  5'- gUGGACGAaGACGGGCagcgcaaCGGCACGu -3'
miRNA:   3'- gACUUGCUgCUGUUCGgg-----GCCGUGCu -5'
8117 3' -56 NC_001978.2 + 3554 0.67 0.553755
Target:  5'- uCUGAGCGGCaagGGCGAGCCCgaUGGacuCACGc -3'
miRNA:   3'- -GACUUGCUG---CUGUUCGGG--GCC---GUGCu -5'
8117 3' -56 NC_001978.2 + 5374 0.67 0.553755
Target:  5'- gUGAAgGuCGACGcGCCaCCGcGCAUGAu -3'
miRNA:   3'- gACUUgCuGCUGUuCGG-GGC-CGUGCU- -5'
8117 3' -56 NC_001978.2 + 29250 0.67 0.563572
Target:  5'- aCUGAuaguucACGACGGCAuacguacGGUUCCGGUcgaGCGGc -3'
miRNA:   3'- -GACU------UGCUGCUGU-------UCGGGGCCG---UGCU- -5'
8117 3' -56 NC_001978.2 + 5992 0.67 0.564665
Target:  5'- -cGAACGGuCGACAcggAGCgaaCCGGCgaaGCGAa -3'
miRNA:   3'- gaCUUGCU-GCUGU---UCGg--GGCCG---UGCU- -5'
8117 3' -56 NC_001978.2 + 30327 0.67 0.564665
Target:  5'- aUGGACGcguagaccuucACGGCGuuuucgucGGCCCCGGCGu-- -3'
miRNA:   3'- gACUUGC-----------UGCUGU--------UCGGGGCCGUgcu -5'
8117 3' -56 NC_001978.2 + 21660 0.66 0.597696
Target:  5'- gCUGuGACGGCauGACgAAGCCCCgucGGUACGu -3'
miRNA:   3'- -GAC-UUGCUG--CUG-UUCGGGG---CCGUGCu -5'
8117 3' -56 NC_001978.2 + 4190 0.66 0.597696
Target:  5'- -gGAGCGGgGGCAGGCUCaGGCucCGGc -3'
miRNA:   3'- gaCUUGCUgCUGUUCGGGgCCGu-GCU- -5'
8117 3' -56 NC_001978.2 + 39168 0.66 0.597696
Target:  5'- gUGAAUGGCGGCuuGacugCCCGGCuuGAa -3'
miRNA:   3'- gACUUGCUGCUGuuCg---GGGCCGugCU- -5'
8117 3' -56 NC_001978.2 + 6069 0.66 0.608778
Target:  5'- -cGGGCGuCGACAAGaagaCCguCGGCGCGc -3'
miRNA:   3'- gaCUUGCuGCUGUUCg---GG--GCCGUGCu -5'
8117 3' -56 NC_001978.2 + 4454 0.66 0.61988
Target:  5'- uCUGucgcAGCGACGGCGccccuGCCCCaGGaACGAu -3'
miRNA:   3'- -GAC----UUGCUGCUGUu----CGGGG-CCgUGCU- -5'
8117 3' -56 NC_001978.2 + 24380 1.09 0.000645
Target:  5'- gCUGAACGACGACAAGCCCCGGCACGAa -3'
miRNA:   3'- -GACUUGCUGCUGUUCGGGGCCGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.