miRNA display CGI


Results 21 - 40 of 65 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8117 3' -56 NC_001978.2 + 13675 0.66 0.597696
Target:  5'- --cGGCGcCGACAacGGCaaCGGCACGAa -3'
miRNA:   3'- gacUUGCuGCUGU--UCGggGCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 13953 0.74 0.225824
Target:  5'- cCUGAACGACGcCcgAAGCuCCCGGaACGAa -3'
miRNA:   3'- -GACUUGCUGCuG--UUCG-GGGCCgUGCU- -5'
8117 3' -56 NC_001978.2 + 15923 0.68 0.510822
Target:  5'- -cGAAgGGCGACAagGGCgacaCgGGCGCGAc -3'
miRNA:   3'- gaCUUgCUGCUGU--UCGg---GgCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 17243 0.84 0.046038
Target:  5'- cCUGAuucuGCGACcacuCAAGCCCCGGCACGGc -3'
miRNA:   3'- -GACU----UGCUGcu--GUUCGGGGCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 18513 0.67 0.521435
Target:  5'- cCUGAGCGGCGcUAuGCCCCcaggauGGCGUGAa -3'
miRNA:   3'- -GACUUGCUGCuGUuCGGGG------CCGUGCU- -5'
8117 3' -56 NC_001978.2 + 18920 0.67 0.521435
Target:  5'- gUGAcgACGACgGGCAGGCUCaGGCGCu- -3'
miRNA:   3'- gACU--UGCUG-CUGUUCGGGgCCGUGcu -5'
8117 3' -56 NC_001978.2 + 18980 0.67 0.532133
Target:  5'- -cGAACcAUGcugAAGCCCCGGuCACGAa -3'
miRNA:   3'- gaCUUGcUGCug-UUCGGGGCC-GUGCU- -5'
8117 3' -56 NC_001978.2 + 19576 0.68 0.459235
Target:  5'- gUGGACGAaGACGGGCagcgcaaCGGCACGu -3'
miRNA:   3'- gACUUGCUgCUGUUCGgg-----GCCGUGCu -5'
8117 3' -56 NC_001978.2 + 19634 0.66 0.597696
Target:  5'- -aGGACGGCGACAAGgucagcgaCCCGcGCAagGAc -3'
miRNA:   3'- gaCUUGCUGCUGUUCg-------GGGC-CGUg-CU- -5'
8117 3' -56 NC_001978.2 + 19946 0.71 0.34806
Target:  5'- -gGAGCG-CGugAaucgcgucGGcCCCCGGCACGGc -3'
miRNA:   3'- gaCUUGCuGCugU--------UC-GGGGCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 20083 0.68 0.510822
Target:  5'- -cGGcACGACcuuCGAGCaCCCGGCGCa- -3'
miRNA:   3'- gaCU-UGCUGcu-GUUCG-GGGCCGUGcu -5'
8117 3' -56 NC_001978.2 + 20316 0.66 0.597696
Target:  5'- -cGcuCGACGGuCAaggaAGCCCgcaCGGCGCGAg -3'
miRNA:   3'- gaCuuGCUGCU-GU----UCGGG---GCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 20470 0.67 0.564665
Target:  5'- -aGGACGGCGuCAAGCUCUucucucagGGCGuCGAc -3'
miRNA:   3'- gaCUUGCUGCuGUUCGGGG--------CCGU-GCU- -5'
8117 3' -56 NC_001978.2 + 20481 0.75 0.197534
Target:  5'- uUGAAgucuuCGGCGACGucGGCCgaCCGGCGCGAc -3'
miRNA:   3'- gACUU-----GCUGCUGU--UCGG--GGCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 21660 0.66 0.597696
Target:  5'- gCUGuGACGGCauGACgAAGCCCCgucGGUACGu -3'
miRNA:   3'- -GAC-UUGCUG--CUG-UUCGGGG---CCGUGCu -5'
8117 3' -56 NC_001978.2 + 24276 0.68 0.469337
Target:  5'- gCUGAACaGAC-ACAcGCCCCGG-GCGGa -3'
miRNA:   3'- -GACUUG-CUGcUGUuCGGGGCCgUGCU- -5'
8117 3' -56 NC_001978.2 + 24380 1.09 0.000645
Target:  5'- gCUGAACGACGACAAGCCCCGGCACGAa -3'
miRNA:   3'- -GACUUGCUGCUGUUCGGGGCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 24405 0.66 0.585541
Target:  5'- cCUGGGCGACGuGCGAGCgcugaagCCgGGCgacACGGu -3'
miRNA:   3'- -GACUUGCUGC-UGUUCG-------GGgCCG---UGCU- -5'
8117 3' -56 NC_001978.2 + 25305 0.7 0.365205
Target:  5'- -gGAGCuGACGACGucGCCcgugucacaaCCGGCACGGc -3'
miRNA:   3'- gaCUUG-CUGCUGUu-CGG----------GGCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 25489 0.75 0.187111
Target:  5'- cCUGGGCGACGuCGAGCCcgaaCCGGUcgGCGGc -3'
miRNA:   3'- -GACUUGCUGCuGUUCGG----GGCCG--UGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.