miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8117 3' -56 NC_001978.2 + 430 0.7 0.365205
Target:  5'- aUGAGCGACaACAGGU--CGGCGCGAc -3'
miRNA:   3'- gACUUGCUGcUGUUCGggGCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 1756 0.69 0.410551
Target:  5'- gCUGAacgucgcacACGGCGGCAAGCUUCGGgcuCGCGu -3'
miRNA:   3'- -GACU---------UGCUGCUGUUCGGGGCC---GUGCu -5'
8117 3' -56 NC_001978.2 + 2575 0.67 0.521435
Target:  5'- aCUGAgccACGACGGCAA-CCCggcguuggguCGGCACa- -3'
miRNA:   3'- -GACU---UGCUGCUGUUcGGG----------GCCGUGcu -5'
8117 3' -56 NC_001978.2 + 2762 0.69 0.420032
Target:  5'- gUGAACGGCGAgCAccauugcaacGGCaaggucgaucuUCCGGCGCGAc -3'
miRNA:   3'- gACUUGCUGCU-GU----------UCG-----------GGGCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 3554 0.67 0.553755
Target:  5'- uCUGAGCGGCaagGGCGAGCCCgaUGGacuCACGc -3'
miRNA:   3'- -GACUUGCUG---CUGUUCGGG--GCC---GUGCu -5'
8117 3' -56 NC_001978.2 + 4190 0.66 0.597696
Target:  5'- -gGAGCGGgGGCAGGCUCaGGCucCGGc -3'
miRNA:   3'- gaCUUGCUgCUGUUCGGGgCCGu-GCU- -5'
8117 3' -56 NC_001978.2 + 4454 0.66 0.61988
Target:  5'- uCUGucgcAGCGACGGCGccccuGCCCCaGGaACGAu -3'
miRNA:   3'- -GAC----UUGCUGCUGUu----CGGGG-CCgUGCU- -5'
8117 3' -56 NC_001978.2 + 4630 0.66 0.608778
Target:  5'- -cGGACGACGACGA-CCCUGaG-ACGGg -3'
miRNA:   3'- gaCUUGCUGCUGUUcGGGGC-CgUGCU- -5'
8117 3' -56 NC_001978.2 + 4810 0.78 0.113306
Target:  5'- -cGGACGGCGACGuuGCCCCGGCuucucauuuCGAc -3'
miRNA:   3'- gaCUUGCUGCUGUu-CGGGGCCGu--------GCU- -5'
8117 3' -56 NC_001978.2 + 5374 0.67 0.553755
Target:  5'- gUGAAgGuCGACGcGCCaCCGcGCAUGAu -3'
miRNA:   3'- gACUUgCuGCUGUuCGG-GGC-CGUGCU- -5'
8117 3' -56 NC_001978.2 + 5992 0.67 0.564665
Target:  5'- -cGAACGGuCGACAcggAGCgaaCCGGCgaaGCGAa -3'
miRNA:   3'- gaCUUGCU-GCUGU---UCGg--GGCCG---UGCU- -5'
8117 3' -56 NC_001978.2 + 6069 0.66 0.608778
Target:  5'- -cGGGCGuCGACAAGaagaCCguCGGCGCGc -3'
miRNA:   3'- gaCUUGCuGCUGUUCg---GG--GCCGUGCu -5'
8117 3' -56 NC_001978.2 + 6647 0.7 0.404927
Target:  5'- --aGACGACGACcuuGcccccguggcuaugcGCUCCGGCGCGAa -3'
miRNA:   3'- gacUUGCUGCUGu--U---------------CGGGGCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 7800 0.66 0.616548
Target:  5'- gCUGAGCGuuGA--GGCUCCGGCgauucaguucacggGCGAg -3'
miRNA:   3'- -GACUUGCugCUguUCGGGGCCG--------------UGCU- -5'
8117 3' -56 NC_001978.2 + 8624 0.68 0.479552
Target:  5'- gCUucAUGACGACAuacGCCauGGCGCGAa -3'
miRNA:   3'- -GAcuUGCUGCUGUu--CGGggCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 9063 0.66 0.608778
Target:  5'- -gGAACGACGuccuugccGCCCaguugGGCGCGAc -3'
miRNA:   3'- gaCUUGCUGCuguu----CGGGg----CCGUGCU- -5'
8117 3' -56 NC_001978.2 + 9263 0.66 0.597696
Target:  5'- aUGGACGucGCGACGGuCCUgGGCgACGAa -3'
miRNA:   3'- gACUUGC--UGCUGUUcGGGgCCG-UGCU- -5'
8117 3' -56 NC_001978.2 + 9584 0.66 0.630994
Target:  5'- gUGAacGCGGCGuACAAGUCCauggggcugaaCGGCGcCGAg -3'
miRNA:   3'- gACU--UGCUGC-UGUUCGGG-----------GCCGU-GCU- -5'
8117 3' -56 NC_001978.2 + 12111 0.73 0.240584
Target:  5'- -cGAAUcaGACGGCGcgcacgguugcggucGGCUCCGGCACGGu -3'
miRNA:   3'- gaCUUG--CUGCUGU---------------UCGGGGCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 12455 0.69 0.410551
Target:  5'- gUGAACGugGuCGAcGCCuUCGGCACa- -3'
miRNA:   3'- gACUUGCugCuGUU-CGG-GGCCGUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.