miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8117 3' -56 NC_001978.2 + 40173 0.72 0.291924
Target:  5'- --cGACGACGACGAagacgacGCCCaggaCGGCACGGa -3'
miRNA:   3'- gacUUGCUGCUGUU-------CGGG----GCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 39168 0.66 0.597696
Target:  5'- gUGAAUGGCGGCuuGacugCCCGGCuuGAa -3'
miRNA:   3'- gACUUGCUGCUGuuCg---GGGCCGugCU- -5'
8117 3' -56 NC_001978.2 + 38638 0.67 0.532133
Target:  5'- -cGAACGcCGACGuGCCC-GGCGCu- -3'
miRNA:   3'- gaCUUGCuGCUGUuCGGGgCCGUGcu -5'
8117 3' -56 NC_001978.2 + 38346 0.7 0.35656
Target:  5'- cCUGGGaaaACGugAAGCCCCGGgGCa- -3'
miRNA:   3'- -GACUUgc-UGCugUUCGGGGCCgUGcu -5'
8117 3' -56 NC_001978.2 + 38243 0.68 0.489875
Target:  5'- -----gGGCGAUu-GCUCCGGCACGGg -3'
miRNA:   3'- gacuugCUGCUGuuCGGGGCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 38203 0.69 0.449249
Target:  5'- -gGGACGucaGCGGCucGCCCCGuGCGCu- -3'
miRNA:   3'- gaCUUGC---UGCUGuuCGGGGC-CGUGcu -5'
8117 3' -56 NC_001978.2 + 36860 0.7 0.401205
Target:  5'- -gGAACGucgucguCGGCAGGCUCCGGCucaGGc -3'
miRNA:   3'- gaCUUGCu------GCUGUUCGGGGCCGug-CU- -5'
8117 3' -56 NC_001978.2 + 36789 0.74 0.225824
Target:  5'- cCUGAGCcggagccugccGACGACGAcGUUCCGGCGCGu -3'
miRNA:   3'- -GACUUG-----------CUGCUGUU-CGGGGCCGUGCu -5'
8117 3' -56 NC_001978.2 + 36156 0.73 0.264225
Target:  5'- uUGAGCGGCGGCAacgguugguucuAGUCCCGGguUGc -3'
miRNA:   3'- gACUUGCUGCUGU------------UCGGGGCCguGCu -5'
8117 3' -56 NC_001978.2 + 35809 0.72 0.291186
Target:  5'- gCUGGGCGACGGCGuuGCCaagggcuucgcaUGGCGCGGc -3'
miRNA:   3'- -GACUUGCUGCUGUu-CGGg-----------GCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 35701 0.7 0.382924
Target:  5'- gCUGGGCGcUGuACAAGCCaCUGGgGCGAu -3'
miRNA:   3'- -GACUUGCuGC-UGUUCGG-GGCCgUGCU- -5'
8117 3' -56 NC_001978.2 + 35571 0.68 0.5003
Target:  5'- -cGAGCcggaGACGGCGccccugAGCgUCGGCGCGAc -3'
miRNA:   3'- gaCUUG----CUGCUGU------UCGgGGCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 35166 0.72 0.285336
Target:  5'- uCUGAGuuCGcCGuCAGcGCCCCGGUACGAc -3'
miRNA:   3'- -GACUU--GCuGCuGUU-CGGGGCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 34648 0.68 0.489875
Target:  5'- --cGACGcCGACuGAGCCCCguugcacccGGCACGGu -3'
miRNA:   3'- gacUUGCuGCUG-UUCGGGG---------CCGUGCU- -5'
8117 3' -56 NC_001978.2 + 33006 0.73 0.264225
Target:  5'- cCUGAACGGCuucuCAAGCUCCGuGcCGCGAa -3'
miRNA:   3'- -GACUUGCUGcu--GUUCGGGGC-C-GUGCU- -5'
8117 3' -56 NC_001978.2 + 32150 0.68 0.469337
Target:  5'- gCUGAACGAgGA--AGCCgaCCGGgGCGGa -3'
miRNA:   3'- -GACUUGCUgCUguUCGG--GGCCgUGCU- -5'
8117 3' -56 NC_001978.2 + 31085 0.69 0.439384
Target:  5'- gCUGAGCGACuGACGAaCgCCgGGCGCa- -3'
miRNA:   3'- -GACUUGCUG-CUGUUcG-GGgCCGUGcu -5'
8117 3' -56 NC_001978.2 + 30774 0.68 0.479552
Target:  5'- gUGAAgGACGGCAagGGCgUCGaGCACGu -3'
miRNA:   3'- gACUUgCUGCUGU--UCGgGGC-CGUGCu -5'
8117 3' -56 NC_001978.2 + 30671 0.66 0.61988
Target:  5'- gCUGAcgguccccaGCGAccCGACuGAGCgCCGGUACGu -3'
miRNA:   3'- -GACU---------UGCU--GCUG-UUCGgGGCCGUGCu -5'
8117 3' -56 NC_001978.2 + 30470 0.67 0.553755
Target:  5'- gCUGAagcacuACGACGAaGAGCCCgaCGGCGaGAu -3'
miRNA:   3'- -GACU------UGCUGCUgUUCGGG--GCCGUgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.