miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8117 3' -56 NC_001978.2 + 29190 0.66 0.61988
Target:  5'- -cGGACacagUGACAAGCCCCGugccGCGCGc -3'
miRNA:   3'- gaCUUGcu--GCUGUUCGGGGC----CGUGCu -5'
8117 3' -56 NC_001978.2 + 8624 0.68 0.479552
Target:  5'- gCUucAUGACGACAuacGCCauGGCGCGAa -3'
miRNA:   3'- -GAcuUGCUGCUGUu--CGGggCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 38203 0.69 0.449249
Target:  5'- -gGGACGucaGCGGCucGCCCCGuGCGCu- -3'
miRNA:   3'- gaCUUGC---UGCUGuuCGGGGC-CGUGcu -5'
8117 3' -56 NC_001978.2 + 24380 1.09 0.000645
Target:  5'- gCUGAACGACGACAAGCCCCGGCACGAa -3'
miRNA:   3'- -GACUUGCUGCUGUUCGGGGCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 4190 0.66 0.597696
Target:  5'- -gGAGCGGgGGCAGGCUCaGGCucCGGc -3'
miRNA:   3'- gaCUUGCUgCUGUUCGGGgCCGu-GCU- -5'
8117 3' -56 NC_001978.2 + 21660 0.66 0.597696
Target:  5'- gCUGuGACGGCauGACgAAGCCCCgucGGUACGu -3'
miRNA:   3'- -GAC-UUGCUG--CUG-UUCGGGG---CCGUGCu -5'
8117 3' -56 NC_001978.2 + 5992 0.67 0.564665
Target:  5'- -cGAACGGuCGACAcggAGCgaaCCGGCgaaGCGAa -3'
miRNA:   3'- gaCUUGCU-GCUGU---UCGg--GGCCG---UGCU- -5'
8117 3' -56 NC_001978.2 + 29250 0.67 0.563572
Target:  5'- aCUGAuaguucACGACGGCAuacguacGGUUCCGGUcgaGCGGc -3'
miRNA:   3'- -GACU------UGCUGCUGU-------UCGGGGCCG---UGCU- -5'
8117 3' -56 NC_001978.2 + 18980 0.67 0.532133
Target:  5'- -cGAACcAUGcugAAGCCCCGGuCACGAa -3'
miRNA:   3'- gaCUUGcUGCug-UUCGGGGCC-GUGCU- -5'
8117 3' -56 NC_001978.2 + 38243 0.68 0.489875
Target:  5'- -----gGGCGAUu-GCUCCGGCACGGg -3'
miRNA:   3'- gacuugCUGCUGuuCGGGGCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 18513 0.67 0.521435
Target:  5'- cCUGAGCGGCGcUAuGCCCCcaggauGGCGUGAa -3'
miRNA:   3'- -GACUUGCUGCuGUuCGGGG------CCGUGCU- -5'
8117 3' -56 NC_001978.2 + 3554 0.67 0.553755
Target:  5'- uCUGAGCGGCaagGGCGAGCCCgaUGGacuCACGc -3'
miRNA:   3'- -GACUUGCUG---CUGUUCGGG--GCC---GUGCu -5'
8117 3' -56 NC_001978.2 + 4454 0.66 0.61988
Target:  5'- uCUGucgcAGCGACGGCGccccuGCCCCaGGaACGAu -3'
miRNA:   3'- -GAC----UUGCUGCUGUu----CGGGG-CCgUGCU- -5'
8117 3' -56 NC_001978.2 + 18920 0.67 0.521435
Target:  5'- gUGAcgACGACgGGCAGGCUCaGGCGCu- -3'
miRNA:   3'- gACU--UGCUG-CUGUUCGGGgCCGUGcu -5'
8117 3' -56 NC_001978.2 + 6069 0.66 0.608778
Target:  5'- -cGGGCGuCGACAAGaagaCCguCGGCGCGc -3'
miRNA:   3'- gaCUUGCuGCUGUUCg---GG--GCCGUGCu -5'
8117 3' -56 NC_001978.2 + 5374 0.67 0.553755
Target:  5'- gUGAAgGuCGACGcGCCaCCGcGCAUGAu -3'
miRNA:   3'- gACUUgCuGCUGUuCGG-GGC-CGUGCU- -5'
8117 3' -56 NC_001978.2 + 20083 0.68 0.510822
Target:  5'- -cGGcACGACcuuCGAGCaCCCGGCGCa- -3'
miRNA:   3'- gaCU-UGCUGcu-GUUCG-GGGCCGUGcu -5'
8117 3' -56 NC_001978.2 + 30774 0.68 0.479552
Target:  5'- gUGAAgGACGGCAagGGCgUCGaGCACGu -3'
miRNA:   3'- gACUUgCUGCUGU--UCGgGGC-CGUGCu -5'
8117 3' -56 NC_001978.2 + 39168 0.66 0.597696
Target:  5'- gUGAAUGGCGGCuuGacugCCCGGCuuGAa -3'
miRNA:   3'- gACUUGCUGCUGuuCg---GGGCCGugCU- -5'
8117 3' -56 NC_001978.2 + 30327 0.67 0.564665
Target:  5'- aUGGACGcguagaccuucACGGCGuuuucgucGGCCCCGGCGu-- -3'
miRNA:   3'- gACUUGC-----------UGCUGU--------UCGGGGCCGUgcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.