miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8117 3' -56 NC_001978.2 + 20470 0.67 0.564665
Target:  5'- -aGGACGGCGuCAAGCUCUucucucagGGCGuCGAc -3'
miRNA:   3'- gaCUUGCUGCuGUUCGGGG--------CCGU-GCU- -5'
8117 3' -56 NC_001978.2 + 29250 0.67 0.563572
Target:  5'- aCUGAuaguucACGACGGCAuacguacGGUUCCGGUcgaGCGGc -3'
miRNA:   3'- -GACU------UGCUGCUGU-------UCGGGGCCG---UGCU- -5'
8117 3' -56 NC_001978.2 + 3554 0.67 0.553755
Target:  5'- uCUGAGCGGCaagGGCGAGCCCgaUGGacuCACGc -3'
miRNA:   3'- -GACUUGCUG---CUGUUCGGG--GCC---GUGCu -5'
8117 3' -56 NC_001978.2 + 5374 0.67 0.553755
Target:  5'- gUGAAgGuCGACGcGCCaCCGcGCAUGAu -3'
miRNA:   3'- gACUUgCuGCUGUuCGG-GGC-CGUGCU- -5'
8117 3' -56 NC_001978.2 + 30470 0.67 0.553755
Target:  5'- gCUGAagcacuACGACGAaGAGCCCgaCGGCGaGAu -3'
miRNA:   3'- -GACU------UGCUGCUgUUCGGG--GCCGUgCU- -5'
8117 3' -56 NC_001978.2 + 38638 0.67 0.532133
Target:  5'- -cGAACGcCGACGuGCCC-GGCGCu- -3'
miRNA:   3'- gaCUUGCuGCUGUuCGGGgCCGUGcu -5'
8117 3' -56 NC_001978.2 + 18980 0.67 0.532133
Target:  5'- -cGAACcAUGcugAAGCCCCGGuCACGAa -3'
miRNA:   3'- gaCUUGcUGCug-UUCGGGGCC-GUGCU- -5'
8117 3' -56 NC_001978.2 + 18513 0.67 0.521435
Target:  5'- cCUGAGCGGCGcUAuGCCCCcaggauGGCGUGAa -3'
miRNA:   3'- -GACUUGCUGCuGUuCGGGG------CCGUGCU- -5'
8117 3' -56 NC_001978.2 + 2575 0.67 0.521435
Target:  5'- aCUGAgccACGACGGCAA-CCCggcguuggguCGGCACa- -3'
miRNA:   3'- -GACU---UGCUGCUGUUcGGG----------GCCGUGcu -5'
8117 3' -56 NC_001978.2 + 18920 0.67 0.521435
Target:  5'- gUGAcgACGACgGGCAGGCUCaGGCGCu- -3'
miRNA:   3'- gACU--UGCUG-CUGUUCGGGgCCGUGcu -5'
8117 3' -56 NC_001978.2 + 15923 0.68 0.510822
Target:  5'- -cGAAgGGCGACAagGGCgacaCgGGCGCGAc -3'
miRNA:   3'- gaCUUgCUGCUGU--UCGg---GgCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 20083 0.68 0.510822
Target:  5'- -cGGcACGACcuuCGAGCaCCCGGCGCa- -3'
miRNA:   3'- gaCU-UGCUGcu-GUUCG-GGGCCGUGcu -5'
8117 3' -56 NC_001978.2 + 35571 0.68 0.5003
Target:  5'- -cGAGCcggaGACGGCGccccugAGCgUCGGCGCGAc -3'
miRNA:   3'- gaCUUG----CUGCUGU------UCGgGGCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 38243 0.68 0.489875
Target:  5'- -----gGGCGAUu-GCUCCGGCACGGg -3'
miRNA:   3'- gacuugCUGCUGuuCGGGGCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 34648 0.68 0.489875
Target:  5'- --cGACGcCGACuGAGCCCCguugcacccGGCACGGu -3'
miRNA:   3'- gacUUGCuGCUG-UUCGGGG---------CCGUGCU- -5'
8117 3' -56 NC_001978.2 + 8624 0.68 0.479552
Target:  5'- gCUucAUGACGACAuacGCCauGGCGCGAa -3'
miRNA:   3'- -GAcuUGCUGCUGUu--CGGggCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 30774 0.68 0.479552
Target:  5'- gUGAAgGACGGCAagGGCgUCGaGCACGu -3'
miRNA:   3'- gACUUgCUGCUGU--UCGgGGC-CGUGCu -5'
8117 3' -56 NC_001978.2 + 32150 0.68 0.469337
Target:  5'- gCUGAACGAgGA--AGCCgaCCGGgGCGGa -3'
miRNA:   3'- -GACUUGCUgCUguUCGG--GGCCgUGCU- -5'
8117 3' -56 NC_001978.2 + 24276 0.68 0.469337
Target:  5'- gCUGAACaGAC-ACAcGCCCCGG-GCGGa -3'
miRNA:   3'- -GACUUG-CUGcUGUuCGGGGCCgUGCU- -5'
8117 3' -56 NC_001978.2 + 19576 0.68 0.459235
Target:  5'- gUGGACGAaGACGGGCagcgcaaCGGCACGu -3'
miRNA:   3'- gACUUGCUgCUGUUCGgg-----GCCGUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.