miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8121 3' -63.2 NC_001978.2 + 39413 0.66 0.300859
Target:  5'- aCCggccGGaGCGUgAuCGGGUCGCGCUGa- -3'
miRNA:   3'- gGGa---CC-CGCGgU-GCCCAGUGCGGCag -5'
8121 3' -63.2 NC_001978.2 + 2639 0.66 0.300859
Target:  5'- gCCCgGGGCGCgcgcauCACGaaGGaacaCGCGUCGUCg -3'
miRNA:   3'- -GGGaCCCGCG------GUGC--CCa---GUGCGGCAG- -5'
8121 3' -63.2 NC_001978.2 + 8817 0.66 0.269157
Target:  5'- gCCggucggGGGCGaaGCGGGggcacugagcgccgCACGcCCGUCa -3'
miRNA:   3'- gGGa-----CCCGCggUGCCCa-------------GUGC-GGCAG- -5'
8121 3' -63.2 NC_001978.2 + 20696 0.66 0.266531
Target:  5'- gCCUGGGCGUagaccucaGCGGcagcguucuucGUCGucuugcgcucCGCCGUCa -3'
miRNA:   3'- gGGACCCGCGg-------UGCC-----------CAGU----------GCGGCAG- -5'
8121 3' -63.2 NC_001978.2 + 36794 0.67 0.262631
Target:  5'- gCCUgGGGCGCCgucuccggcuccgugACGGGcUCAggcucCGCCGg- -3'
miRNA:   3'- gGGA-CCCGCGG---------------UGCCC-AGU-----GCGGCag -5'
8121 3' -63.2 NC_001978.2 + 36884 0.67 0.260058
Target:  5'- gCCUGGGCGUU-CGGcagaCGCGCCGg- -3'
miRNA:   3'- gGGACCCGCGGuGCCca--GUGCGGCag -5'
8121 3' -63.2 NC_001978.2 + 853 0.67 0.247496
Target:  5'- gCCUGGGCGCgcgacugggCACGGGgucugUACGguuaccggcUCGUCg -3'
miRNA:   3'- gGGACCCGCG---------GUGCCCa----GUGC---------GGCAG- -5'
8121 3' -63.2 NC_001978.2 + 21328 0.67 0.247496
Target:  5'- cCCCUGGgacacGCGCC-CGGGggcuUCGC-CCGUa -3'
miRNA:   3'- -GGGACC-----CGCGGuGCCC----AGUGcGGCAg -5'
8121 3' -63.2 NC_001978.2 + 28119 0.67 0.234852
Target:  5'- gCCCUGaguguccGGCGCCgACGGGUCgACGUa--- -3'
miRNA:   3'- -GGGAC-------CCGCGG-UGCCCAG-UGCGgcag -5'
8121 3' -63.2 NC_001978.2 + 28047 0.67 0.229601
Target:  5'- gUCCUGGG-GCUgacGCGGGUCAaucaG-CGUCg -3'
miRNA:   3'- -GGGACCCgCGG---UGCCCAGUg---CgGCAG- -5'
8121 3' -63.2 NC_001978.2 + 19722 0.68 0.223883
Target:  5'- gCCUUGucgaaGGCGUCcuugcGCGGGUCGCugaccuugucGCCGUCc -3'
miRNA:   3'- -GGGAC-----CCGCGG-----UGCCCAGUG----------CGGCAG- -5'
8121 3' -63.2 NC_001978.2 + 26036 0.68 0.223318
Target:  5'- -gCUGGGgaacuUGCC-CGGGUCGCGCUcacgccaGUCa -3'
miRNA:   3'- ggGACCC-----GCGGuGCCCAGUGCGG-------CAG- -5'
8121 3' -63.2 NC_001978.2 + 7991 0.68 0.217734
Target:  5'- uUCC-GGGCucgacguacgugaGCUugauuGCGGGcgUCACGCCGUCg -3'
miRNA:   3'- -GGGaCCCG-------------CGG-----UGCCC--AGUGCGGCAG- -5'
8121 3' -63.2 NC_001978.2 + 26089 0.68 0.207453
Target:  5'- aCCUGGGCacgGUCgcggACGGGUCGaGCCGa- -3'
miRNA:   3'- gGGACCCG---CGG----UGCCCAGUgCGGCag -5'
8121 3' -63.2 NC_001978.2 + 30998 0.68 0.207453
Target:  5'- aCCUGGGCGCaCAUGccuuccauGUCGCacCCGUCa -3'
miRNA:   3'- gGGACCCGCG-GUGCc-------CAGUGc-GGCAG- -5'
8121 3' -63.2 NC_001978.2 + 102 0.68 0.205868
Target:  5'- gCCUgggGGGCGCC-UGGGUCcggcggcucaccuaGCGCgCGUUu -3'
miRNA:   3'- -GGGa--CCCGCGGuGCCCAG--------------UGCG-GCAG- -5'
8121 3' -63.2 NC_001978.2 + 2981 0.68 0.202212
Target:  5'- aCCUGGGCGCCguucggcuuccgGCGagacGGUCACuCCG-Ca -3'
miRNA:   3'- gGGACCCGCGG------------UGC----CCAGUGcGGCaG- -5'
8121 3' -63.2 NC_001978.2 + 21197 0.68 0.201178
Target:  5'- aCCUGGGCGCgaaucaccuucaGCGcGUCG-GCCGUCu -3'
miRNA:   3'- gGGACCCGCGg-----------UGCcCAGUgCGGCAG- -5'
8121 3' -63.2 NC_001978.2 + 4354 0.69 0.184288
Target:  5'- aCCUGGGCGgCuucCGGGaacgcaUCguuccuggggcagggGCGCCGUCg -3'
miRNA:   3'- gGGACCCGCgGu--GCCC------AG---------------UGCGGCAG- -5'
8121 3' -63.2 NC_001978.2 + 34672 0.7 0.151809
Target:  5'- -gCUGGGCGUucagucgguCGCGGaGcuugCGCGCCGUCu -3'
miRNA:   3'- ggGACCCGCG---------GUGCC-Ca---GUGCGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.