miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8122 3' -54.7 NC_001978.2 + 34631 0.66 0.70527
Target:  5'- aGCGUCAUacucaccauuuccccAGCgGAgCCGuc-CGGCAGg -3'
miRNA:   3'- cCGCAGUA---------------UCGgCU-GGCuauGCCGUC- -5'
8122 3' -54.7 NC_001978.2 + 30491 0.66 0.697582
Target:  5'- cGGCGUCcgcguucucAGCCGACgugaccuugucgagCGAcACGGCAc -3'
miRNA:   3'- -CCGCAGua-------UCGGCUG--------------GCUaUGCCGUc -5'
8122 3' -54.7 NC_001978.2 + 2557 0.66 0.689863
Target:  5'- cGCGUgcCGUgacGGUCGACUGAgccacgACGGCAa -3'
miRNA:   3'- cCGCA--GUA---UCGGCUGGCUa-----UGCCGUc -5'
8122 3' -54.7 NC_001978.2 + 14222 0.66 0.678788
Target:  5'- cGCGcCcgAUAGCCGACCacucgacCGGCGGg -3'
miRNA:   3'- cCGCaG--UAUCGGCUGGcuau---GCCGUC- -5'
8122 3' -54.7 NC_001978.2 + 18618 0.66 0.678788
Target:  5'- cGCGUCGcauucGCUGACCcguugaagGCGGCAGc -3'
miRNA:   3'- cCGCAGUau---CGGCUGGcua-----UGCCGUC- -5'
8122 3' -54.7 NC_001978.2 + 12408 0.66 0.677678
Target:  5'- cGCGUUGUccGGCCGugUcgggaccgucggcGAaGCGGCAGg -3'
miRNA:   3'- cCGCAGUA--UCGGCugG-------------CUaUGCCGUC- -5'
8122 3' -54.7 NC_001978.2 + 26410 0.66 0.667666
Target:  5'- cGCGUCGUcauggugaAGCCG-CgCGAcucCGGCAGg -3'
miRNA:   3'- cCGCAGUA--------UCGGCuG-GCUau-GCCGUC- -5'
8122 3' -54.7 NC_001978.2 + 30170 0.66 0.656511
Target:  5'- cGCGUUcgAGCgcuacguguacgCGACCGuugACGGCAc -3'
miRNA:   3'- cCGCAGuaUCG------------GCUGGCua-UGCCGUc -5'
8122 3' -54.7 NC_001978.2 + 33853 0.66 0.656511
Target:  5'- cGGCGUUAcccggguGCCGACCG-UGCGcGUg- -3'
miRNA:   3'- -CCGCAGUau-----CGGCUGGCuAUGC-CGuc -5'
8122 3' -54.7 NC_001978.2 + 20471 0.66 0.656511
Target:  5'- cGGCGaCGUcGGCCGACCGGcGCGa--- -3'
miRNA:   3'- -CCGCaGUA-UCGGCUGGCUaUGCcguc -5'
8122 3' -54.7 NC_001978.2 + 5705 0.67 0.645332
Target:  5'- cGGCGUC--AGCCucACCGAa--GGCAGc -3'
miRNA:   3'- -CCGCAGuaUCGGc-UGGCUaugCCGUC- -5'
8122 3' -54.7 NC_001978.2 + 32211 0.67 0.63414
Target:  5'- uGGCG-CAcGGCUgaGGCUGA-GCGGCAGc -3'
miRNA:   3'- -CCGCaGUaUCGG--CUGGCUaUGCCGUC- -5'
8122 3' -54.7 NC_001978.2 + 22924 0.67 0.600594
Target:  5'- aGCGaCGUcAGaCCGACCGcGUACaGGCAGu -3'
miRNA:   3'- cCGCaGUA-UC-GGCUGGC-UAUG-CCGUC- -5'
8122 3' -54.7 NC_001978.2 + 18275 0.68 0.593907
Target:  5'- gGGCGcCAUGGgCGACCacagcaagccggGCGGCAa -3'
miRNA:   3'- -CCGCaGUAUCgGCUGGcua---------UGCCGUc -5'
8122 3' -54.7 NC_001978.2 + 29903 0.68 0.567298
Target:  5'- cGGgGUCA---CUGACCGugcgACGGCAGc -3'
miRNA:   3'- -CCgCAGUaucGGCUGGCua--UGCCGUC- -5'
8122 3' -54.7 NC_001978.2 + 7960 0.68 0.56069
Target:  5'- gGGCGUCAc-GCCGucgcCCGGgucgagcacacggaACGGCAGa -3'
miRNA:   3'- -CCGCAGUauCGGCu---GGCUa-------------UGCCGUC- -5'
8122 3' -54.7 NC_001978.2 + 12019 0.68 0.556296
Target:  5'- cGCGUCucagcuuGCCGACUGGcaggugaucgcUACGGCGc -3'
miRNA:   3'- cCGCAGuau----CGGCUGGCU-----------AUGCCGUc -5'
8122 3' -54.7 NC_001978.2 + 11415 0.68 0.545357
Target:  5'- gGGCG-CAgcGuCCGACCGA-ACGGCc- -3'
miRNA:   3'- -CCGCaGUauC-GGCUGGCUaUGCCGuc -5'
8122 3' -54.7 NC_001978.2 + 2629 0.68 0.534489
Target:  5'- -cCGUCGUGGCucaguCGACCGucACGGCAc -3'
miRNA:   3'- ccGCAGUAUCG-----GCUGGCuaUGCCGUc -5'
8122 3' -54.7 NC_001978.2 + 1810 0.68 0.534489
Target:  5'- cGGCGUCc--GCCGACaCGAccCGGUAa -3'
miRNA:   3'- -CCGCAGuauCGGCUG-GCUauGCCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.