Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8129 | 5' | -63.7 | NC_001978.2 | + | 11105 | 0.66 | 0.225579 |
Target: 5'- -aCGCCGgagacgucCGCAgCGCCCAGGCgACu- -3' miRNA: 3'- gcGUGGC--------GCGUgGCGGGUCCGgUGuu -5' |
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8129 | 5' | -63.7 | NC_001978.2 | + | 37388 | 0.66 | 0.214226 |
Target: 5'- gGCGCCGaccaucgauaGCGCCGCUgAGGCaCugAc -3' miRNA: 3'- gCGUGGCg---------CGUGGCGGgUCCG-GugUu -5' |
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8129 | 5' | -63.7 | NC_001978.2 | + | 17691 | 0.66 | 0.21984 |
Target: 5'- gGCuACgGgGCACguggCGCCCAGGUCACc- -3' miRNA: 3'- gCG-UGgCgCGUG----GCGGGUCCGGUGuu -5' |
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8129 | 5' | -63.7 | NC_001978.2 | + | 7882 | 0.66 | 0.231444 |
Target: 5'- cCGUuCCGUGUGCuCGaCCCGGGCgACGg -3' miRNA: 3'- -GCGuGGCGCGUG-GC-GGGUCCGgUGUu -5' |
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8129 | 5' | -63.7 | NC_001978.2 | + | 3645 | 0.66 | 0.236833 |
Target: 5'- gCGCACCGCGUAgCGCUUcugacggAGGgUGCGAa -3' miRNA: 3'- -GCGUGGCGCGUgGCGGG-------UCCgGUGUU- -5' |
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8129 | 5' | -63.7 | NC_001978.2 | + | 41238 | 0.66 | 0.236833 |
Target: 5'- gCGCACUGUGCuACCuGCCUGGGUugguaccugccauCACAGc -3' miRNA: 3'- -GCGUGGCGCG-UGG-CGGGUCCG-------------GUGUU- -5' |
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8129 | 5' | -63.7 | NC_001978.2 | + | 16508 | 0.66 | 0.242943 |
Target: 5'- uCGCaACCGgGUucaccacGCCGCCCGGGuagaccgaCCACGc -3' miRNA: 3'- -GCG-UGGCgCG-------UGGCGGGUCC--------GGUGUu -5' |
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8129 | 5' | -63.7 | NC_001978.2 | + | 40312 | 0.66 | 0.237438 |
Target: 5'- cCGCugUGCGC-CCGUCuCAGcGCCuaACAGg -3' miRNA: 3'- -GCGugGCGCGuGGCGG-GUC-CGG--UGUU- -5' |
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8129 | 5' | -63.7 | NC_001978.2 | + | 34293 | 0.66 | 0.231444 |
Target: 5'- aCGUAUCGCGUugCGCUCAgcguGGUCgGCAAc -3' miRNA: 3'- -GCGUGGCGCGugGCGGGU----CCGG-UGUU- -5' |
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8129 | 5' | -63.7 | NC_001978.2 | + | 22136 | 0.66 | 0.231444 |
Target: 5'- gGCGCUcaaacaggucguGCGCuucGCUGCCCAGGUCggcGCGAa -3' miRNA: 3'- gCGUGG------------CGCG---UGGCGGGUCCGG---UGUU- -5' |
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8129 | 5' | -63.7 | NC_001978.2 | + | 27247 | 0.66 | 0.216456 |
Target: 5'- aCGCGuuGCgGUGCuaaucgacuccggguCGCCCAGGCCAUu- -3' miRNA: 3'- -GCGUggCG-CGUG---------------GCGGGUCCGGUGuu -5' |
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8129 | 5' | -63.7 | NC_001978.2 | + | 24 | 0.67 | 0.1976 |
Target: 5'- gCGCuaggugaGCCGCcggacccagGCGCCcCCCAGGCCAaCGAc -3' miRNA: 3'- -GCG-------UGGCG---------CGUGGcGGGUCCGGU-GUU- -5' |
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8129 | 5' | -63.7 | NC_001978.2 | + | 743 | 0.67 | 0.192988 |
Target: 5'- gGCGCUgaaGCGCGCUgagGCUgAGGCCACc- -3' miRNA: 3'- gCGUGG---CGCGUGG---CGGgUCCGGUGuu -5' |
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8129 | 5' | -63.7 | NC_001978.2 | + | 16928 | 0.67 | 0.192988 |
Target: 5'- aCGUACCaUGCGCgCGCCCAGGgCGa-- -3' miRNA: 3'- -GCGUGGcGCGUG-GCGGGUCCgGUguu -5' |
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8129 | 5' | -63.7 | NC_001978.2 | + | 16640 | 0.67 | 0.208735 |
Target: 5'- gGauuCCGuCGCACUGcCCCAGGCUggGCAGg -3' miRNA: 3'- gCgu-GGC-GCGUGGC-GGGUCCGG--UGUU- -5' |
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8129 | 5' | -63.7 | NC_001978.2 | + | 23905 | 0.67 | 0.178292 |
Target: 5'- aGCGgUGCGCAUggugugUGCCCAGGCUuccgGCGAc -3' miRNA: 3'- gCGUgGCGCGUG------GCGGGUCCGG----UGUU- -5' |
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8129 | 5' | -63.7 | NC_001978.2 | + | 33054 | 0.67 | 0.183077 |
Target: 5'- cCGC-CCGUGCGCUacuGCCCAacGCCGCGc -3' miRNA: 3'- -GCGuGGCGCGUGG---CGGGUc-CGGUGUu -5' |
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8129 | 5' | -63.7 | NC_001978.2 | + | 32195 | 0.67 | 0.208735 |
Target: 5'- gCGCACCgcugagggaugGCGCACgGCUgAGGCUgaGCGg -3' miRNA: 3'- -GCGUGG-----------CGCGUGgCGGgUCCGG--UGUu -5' |
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8129 | 5' | -63.7 | NC_001978.2 | + | 33573 | 0.68 | 0.169054 |
Target: 5'- gGCGCCGUG-ACCGucgggugugacCCCGGGCCGgAAu -3' miRNA: 3'- gCGUGGCGCgUGGC-----------GGGUCCGGUgUU- -5' |
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8129 | 5' | -63.7 | NC_001978.2 | + | 27783 | 0.68 | 0.164598 |
Target: 5'- gGCACgGCGCAUgaaGCCUGGGUCAUu- -3' miRNA: 3'- gCGUGgCGCGUGg--CGGGUCCGGUGuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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