miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8129 5' -63.7 NC_001978.2 + 26077 0.73 0.071936
Target:  5'- gCGCACCGUaccgGCGCCGUUCAGGUguCGAg -3'
miRNA:   3'- -GCGUGGCG----CGUGGCGGGUCCGguGUU- -5'
8129 5' -63.7 NC_001978.2 + 41238 0.66 0.236833
Target:  5'- gCGCACUGUGCuACCuGCCUGGGUugguaccugccauCACAGc -3'
miRNA:   3'- -GCGUGGCGCG-UGG-CGGGUCCG-------------GUGUU- -5'
8129 5' -63.7 NC_001978.2 + 3645 0.66 0.236833
Target:  5'- gCGCACCGCGUAgCGCUUcugacggAGGgUGCGAa -3'
miRNA:   3'- -GCGUGGCGCGUgGCGGG-------UCCgGUGUU- -5'
8129 5' -63.7 NC_001978.2 + 7882 0.66 0.231444
Target:  5'- cCGUuCCGUGUGCuCGaCCCGGGCgACGg -3'
miRNA:   3'- -GCGuGGCGCGUG-GC-GGGUCCGgUGUu -5'
8129 5' -63.7 NC_001978.2 + 17691 0.66 0.21984
Target:  5'- gGCuACgGgGCACguggCGCCCAGGUCACc- -3'
miRNA:   3'- gCG-UGgCgCGUG----GCGGGUCCGGUGuu -5'
8129 5' -63.7 NC_001978.2 + 37388 0.66 0.214226
Target:  5'- gGCGCCGaccaucgauaGCGCCGCUgAGGCaCugAc -3'
miRNA:   3'- gCGUGGCg---------CGUGGCGGgUCCG-GugUu -5'
8129 5' -63.7 NC_001978.2 + 32195 0.67 0.208735
Target:  5'- gCGCACCgcugagggaugGCGCACgGCUgAGGCUgaGCGg -3'
miRNA:   3'- -GCGUGG-----------CGCGUGgCGGgUCCGG--UGUu -5'
8129 5' -63.7 NC_001978.2 + 16640 0.67 0.208735
Target:  5'- gGauuCCGuCGCACUGcCCCAGGCUggGCAGg -3'
miRNA:   3'- gCgu-GGC-GCGUGGC-GGGUCCGG--UGUU- -5'
8129 5' -63.7 NC_001978.2 + 24 0.67 0.1976
Target:  5'- gCGCuaggugaGCCGCcggacccagGCGCCcCCCAGGCCAaCGAc -3'
miRNA:   3'- -GCG-------UGGCG---------CGUGGcGGGUCCGGU-GUU- -5'
8129 5' -63.7 NC_001978.2 + 33054 0.67 0.183077
Target:  5'- cCGC-CCGUGCGCUacuGCCCAacGCCGCGc -3'
miRNA:   3'- -GCGuGGCGCGUGG---CGGGUc-CGGUGUu -5'
8129 5' -63.7 NC_001978.2 + 22989 0.72 0.087579
Target:  5'- uGUugCGCGUuguACCGCCCGGGUUGCc- -3'
miRNA:   3'- gCGugGCGCG---UGGCGGGUCCGGUGuu -5'
8129 5' -63.7 NC_001978.2 + 30371 0.69 0.1326
Target:  5'- aCGCGCCGaa-GCCGCCC-GGCuCGCGu -3'
miRNA:   3'- -GCGUGGCgcgUGGCGGGuCCG-GUGUu -5'
8129 5' -63.7 NC_001978.2 + 38022 0.68 0.160248
Target:  5'- -uUACUGCGCGCUGcCCCAGGaCgACGAc -3'
miRNA:   3'- gcGUGGCGCGUGGC-GGGUCC-GgUGUU- -5'
8129 5' -63.7 NC_001978.2 + 24389 0.68 0.160248
Target:  5'- cCGaCGCUGCGC-CUGCCCuGGGCgACGu -3'
miRNA:   3'- -GC-GUGGCGCGuGGCGGG-UCCGgUGUu -5'
8129 5' -63.7 NC_001978.2 + 27783 0.68 0.164598
Target:  5'- gGCACgGCGCAUgaaGCCUGGGUCAUu- -3'
miRNA:   3'- gCGUGgCGCGUGg--CGGGUCCGGUGuu -5'
8129 5' -63.7 NC_001978.2 + 33573 0.68 0.169054
Target:  5'- gGCGCCGUG-ACCGucgggugugacCCCGGGCCGgAAu -3'
miRNA:   3'- gCGUGGCGCgUGGC-----------GGGUCCGGUgUU- -5'
8129 5' -63.7 NC_001978.2 + 5999 0.68 0.173619
Target:  5'- gCGCGCCGaCGguCuucuugucgaCGCCCGGGgCGCGAa -3'
miRNA:   3'- -GCGUGGC-GCguG----------GCGGGUCCgGUGUU- -5'
8129 5' -63.7 NC_001978.2 + 27191 1.05 0.000168
Target:  5'- cCGCACCGCGCACCGCCCAGGCCACAAu -3'
miRNA:   3'- -GCGUGGCGCGUGGCGGGUCCGGUGUU- -5'
8129 5' -63.7 NC_001978.2 + 40312 0.66 0.237438
Target:  5'- cCGCugUGCGC-CCGUCuCAGcGCCuaACAGg -3'
miRNA:   3'- -GCGugGCGCGuGGCGG-GUC-CGG--UGUU- -5'
8129 5' -63.7 NC_001978.2 + 34293 0.66 0.231444
Target:  5'- aCGUAUCGCGUugCGCUCAgcguGGUCgGCAAc -3'
miRNA:   3'- -GCGUGGCGCGugGCGGGU----CCGG-UGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.