Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8129 | 5' | -63.7 | NC_001978.2 | + | 27191 | 1.05 | 0.000168 |
Target: 5'- cCGCACCGCGCACCGCCCAGGCCACAAu -3' miRNA: 3'- -GCGUGGCGCGUGGCGGGUCCGGUGUU- -5' |
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8129 | 5' | -63.7 | NC_001978.2 | + | 26077 | 0.73 | 0.071936 |
Target: 5'- gCGCACCGUaccgGCGCCGUUCAGGUguCGAg -3' miRNA: 3'- -GCGUGGCG----CGUGGCGGGUCCGguGUU- -5' |
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8129 | 5' | -63.7 | NC_001978.2 | + | 19646 | 0.72 | 0.082111 |
Target: 5'- aCGUGCCGuUGCGCUGCCCgucuucguccacguAGGCCACc- -3' miRNA: 3'- -GCGUGGC-GCGUGGCGGG--------------UCCGGUGuu -5' |
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8129 | 5' | -63.7 | NC_001978.2 | + | 22989 | 0.72 | 0.087579 |
Target: 5'- uGUugCGCGUuguACCGCCCGGGUUGCc- -3' miRNA: 3'- gCGugGCGCG---UGGCGGGUCCGGUGuu -5' |
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8129 | 5' | -63.7 | NC_001978.2 | + | 26330 | 0.7 | 0.112473 |
Target: 5'- aCGCACgCGCGuUGCCGacuucaCCCAGGUCACGc -3' miRNA: 3'- -GCGUG-GCGC-GUGGC------GGGUCCGGUGUu -5' |
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8129 | 5' | -63.7 | NC_001978.2 | + | 24906 | 0.7 | 0.125547 |
Target: 5'- uCGCAgUagGCGCACCGguagcCCCAGcGCCGCAu -3' miRNA: 3'- -GCGUgG--CGCGUGGC-----GGGUC-CGGUGUu -5' |
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8129 | 5' | -63.7 | NC_001978.2 | + | 1364 | 0.69 | 0.130447 |
Target: 5'- uGUGCCGCGCAaucacggggucgauuCCgGCCCAGuccGCCACGGu -3' miRNA: 3'- gCGUGGCGCGU---------------GG-CGGGUC---CGGUGUU- -5' |
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8129 | 5' | -63.7 | NC_001978.2 | + | 30371 | 0.69 | 0.1326 |
Target: 5'- aCGCGCCGaa-GCCGCCC-GGCuCGCGu -3' miRNA: 3'- -GCGUGGCgcgUGGCGGGuCCG-GUGUu -5' |
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8129 | 5' | -63.7 | NC_001978.2 | + | 38022 | 0.68 | 0.160248 |
Target: 5'- -uUACUGCGCGCUGcCCCAGGaCgACGAc -3' miRNA: 3'- gcGUGGCGCGUGGC-GGGUCC-GgUGUU- -5' |
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8129 | 5' | -63.7 | NC_001978.2 | + | 24389 | 0.68 | 0.160248 |
Target: 5'- cCGaCGCUGCGC-CUGCCCuGGGCgACGu -3' miRNA: 3'- -GC-GUGGCGCGuGGCGGG-UCCGgUGUu -5' |
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8129 | 5' | -63.7 | NC_001978.2 | + | 38470 | 0.68 | 0.164598 |
Target: 5'- aGCAcCCGCGUACgUGUCCAccccGGUCACAAc -3' miRNA: 3'- gCGU-GGCGCGUG-GCGGGU----CCGGUGUU- -5' |
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8129 | 5' | -63.7 | NC_001978.2 | + | 27783 | 0.68 | 0.164598 |
Target: 5'- gGCACgGCGCAUgaaGCCUGGGUCAUu- -3' miRNA: 3'- gCGUGgCGCGUGg--CGGGUCCGGUGuu -5' |
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8129 | 5' | -63.7 | NC_001978.2 | + | 33573 | 0.68 | 0.169054 |
Target: 5'- gGCGCCGUG-ACCGucgggugugacCCCGGGCCGgAAu -3' miRNA: 3'- gCGUGGCGCgUGGC-----------GGGUCCGGUgUU- -5' |
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8129 | 5' | -63.7 | NC_001978.2 | + | 5999 | 0.68 | 0.173619 |
Target: 5'- gCGCGCCGaCGguCuucuugucgaCGCCCGGGgCGCGAa -3' miRNA: 3'- -GCGUGGC-GCguG----------GCGGGUCCgGUGUU- -5' |
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8129 | 5' | -63.7 | NC_001978.2 | + | 23905 | 0.67 | 0.178292 |
Target: 5'- aGCGgUGCGCAUggugugUGCCCAGGCUuccgGCGAc -3' miRNA: 3'- gCGUgGCGCGUG------GCGGGUCCGG----UGUU- -5' |
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8129 | 5' | -63.7 | NC_001978.2 | + | 33054 | 0.67 | 0.183077 |
Target: 5'- cCGC-CCGUGCGCUacuGCCCAacGCCGCGc -3' miRNA: 3'- -GCGuGGCGCGUGG---CGGGUc-CGGUGUu -5' |
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8129 | 5' | -63.7 | NC_001978.2 | + | 743 | 0.67 | 0.192988 |
Target: 5'- gGCGCUgaaGCGCGCUgagGCUgAGGCCACc- -3' miRNA: 3'- gCGUGG---CGCGUGG---CGGgUCCGGUGuu -5' |
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8129 | 5' | -63.7 | NC_001978.2 | + | 16928 | 0.67 | 0.192988 |
Target: 5'- aCGUACCaUGCGCgCGCCCAGGgCGa-- -3' miRNA: 3'- -GCGUGGcGCGUG-GCGGGUCCgGUguu -5' |
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8129 | 5' | -63.7 | NC_001978.2 | + | 24 | 0.67 | 0.1976 |
Target: 5'- gCGCuaggugaGCCGCcggacccagGCGCCcCCCAGGCCAaCGAc -3' miRNA: 3'- -GCG-------UGGCG---------CGUGGcGGGUCCGGU-GUU- -5' |
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8129 | 5' | -63.7 | NC_001978.2 | + | 32195 | 0.67 | 0.208735 |
Target: 5'- gCGCACCgcugagggaugGCGCACgGCUgAGGCUgaGCGg -3' miRNA: 3'- -GCGUGG-----------CGCGUGgCGGgUCCGG--UGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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