miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8135 3' -57.9 NC_001978.2 + 320 0.66 0.503039
Target:  5'- cCAUACGUCcuUGCCGgucGCCUucaGGuGCGCGg -3'
miRNA:   3'- uGUAUGCAGu-GCGGC---UGGA---CC-CGCGU- -5'
8135 3' -57.9 NC_001978.2 + 23124 0.66 0.501994
Target:  5'- aGCGUgagACG-UACGCCGACgacaccgUUGGGCGUu -3'
miRNA:   3'- -UGUA---UGCaGUGCGGCUG-------GACCCGCGu -5'
8135 3' -57.9 NC_001978.2 + 13633 0.66 0.492639
Target:  5'- aACGga-GUCgACGCCGaACC-GGGCGUg -3'
miRNA:   3'- -UGUaugCAG-UGCGGC-UGGaCCCGCGu -5'
8135 3' -57.9 NC_001978.2 + 18314 0.66 0.482339
Target:  5'- cGCAcGCGcCGCGuuGAgUUGGGCGa- -3'
miRNA:   3'- -UGUaUGCaGUGCggCUgGACCCGCgu -5'
8135 3' -57.9 NC_001978.2 + 33775 0.66 0.472144
Target:  5'- ---gGCGUUcCGCgaagCGugCUGGGCGCu -3'
miRNA:   3'- uguaUGCAGuGCG----GCugGACCCGCGu -5'
8135 3' -57.9 NC_001978.2 + 28037 0.66 0.472144
Target:  5'- -aGUGCGUUcuACGUCGACCcgucGGCGCc -3'
miRNA:   3'- ugUAUGCAG--UGCGGCUGGac--CCGCGu -5'
8135 3' -57.9 NC_001978.2 + 14876 0.66 0.462059
Target:  5'- -----gGUCACGCCGACgUaaucGGCGCGc -3'
miRNA:   3'- uguaugCAGUGCGGCUGgAc---CCGCGU- -5'
8135 3' -57.9 NC_001978.2 + 17784 0.66 0.459056
Target:  5'- ---cGCGacaaGCGCCuuaccgaccuggguGACCUGGGCGCc -3'
miRNA:   3'- uguaUGCag--UGCGG--------------CUGGACCCGCGu -5'
8135 3' -57.9 NC_001978.2 + 9065 0.67 0.452089
Target:  5'- aACG-ACGUCcuUGCCGcCCaguUGGGCGCGa -3'
miRNA:   3'- -UGUaUGCAGu-GCGGCuGG---ACCCGCGU- -5'
8135 3' -57.9 NC_001978.2 + 29383 0.67 0.421952
Target:  5'- gGCGUGCccGUCgucgccgACGCUGACCUaGGGgGCc -3'
miRNA:   3'- -UGUAUG--CAG-------UGCGGCUGGA-CCCgCGu -5'
8135 3' -57.9 NC_001978.2 + 30696 0.67 0.413431
Target:  5'- cGCA-ACGUC-CGCCGGagucgucucgcCCUGGGUgGCAa -3'
miRNA:   3'- -UGUaUGCAGuGCGGCU-----------GGACCCG-CGU- -5'
8135 3' -57.9 NC_001978.2 + 12826 0.67 0.404089
Target:  5'- gACGUACGgaagCACGUCGGCggGuGGCGUc -3'
miRNA:   3'- -UGUAUGCa---GUGCGGCUGgaC-CCGCGu -5'
8135 3' -57.9 NC_001978.2 + 13729 0.68 0.394882
Target:  5'- cCGU-UGUCgGCGCCGACCgcauaGGCGCGa -3'
miRNA:   3'- uGUAuGCAG-UGCGGCUGGac---CCGCGU- -5'
8135 3' -57.9 NC_001978.2 + 16729 0.68 0.393969
Target:  5'- --uUGCGUCGa-CCGugcuucaGCCUGGGCGCu -3'
miRNA:   3'- uguAUGCAGUgcGGC-------UGGACCCGCGu -5'
8135 3' -57.9 NC_001978.2 + 19858 0.68 0.385811
Target:  5'- gACGUGCGcauUgGCGCCGugCcGGGgGCc -3'
miRNA:   3'- -UGUAUGC---AgUGCGGCugGaCCCgCGu -5'
8135 3' -57.9 NC_001978.2 + 20470 0.68 0.376879
Target:  5'- gGCG-ACGUCG-GCCGACC--GGCGCGa -3'
miRNA:   3'- -UGUaUGCAGUgCGGCUGGacCCGCGU- -5'
8135 3' -57.9 NC_001978.2 + 9440 0.68 0.368087
Target:  5'- ------uUCGCGCCuuCCUGGGCGCc -3'
miRNA:   3'- uguaugcAGUGCGGcuGGACCCGCGu -5'
8135 3' -57.9 NC_001978.2 + 11284 0.68 0.359438
Target:  5'- aACGgucggACgGUCACGCUGACgCUugagguauacGGGCGCGa -3'
miRNA:   3'- -UGUa----UG-CAGUGCGGCUG-GA----------CCCGCGU- -5'
8135 3' -57.9 NC_001978.2 + 16736 0.68 0.359438
Target:  5'- cGCAUaGCGgcaagCGCGCCGguuuccugcccaGCCUGGG-GCAg -3'
miRNA:   3'- -UGUA-UGCa----GUGCGGC------------UGGACCCgCGU- -5'
8135 3' -57.9 NC_001978.2 + 15888 0.69 0.325478
Target:  5'- aGCAUgucaccaACGggCACGUCGGCCgacgGGGUGCc -3'
miRNA:   3'- -UGUA-------UGCa-GUGCGGCUGGa---CCCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.