Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8135 | 3' | -57.9 | NC_001978.2 | + | 40259 | 0.72 | 0.210919 |
Target: 5'- cGC-UACGUCuuccgUGCCGuCCUGGGCGUc -3' miRNA: 3'- -UGuAUGCAGu----GCGGCuGGACCCGCGu -5' |
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8135 | 3' | -57.9 | NC_001978.2 | + | 36064 | 0.7 | 0.298419 |
Target: 5'- cGCcgACGugcuacacgggccacUCAccCGCCGAcaCCUGGGCGCGc -3' miRNA: 3'- -UGuaUGC---------------AGU--GCGGCU--GGACCCGCGU- -5' |
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8135 | 3' | -57.9 | NC_001978.2 | + | 35647 | 0.71 | 0.247022 |
Target: 5'- -----gGUCGCGCCGACgCUcagGGGCGCc -3' miRNA: 3'- uguaugCAGUGCGGCUG-GA---CCCGCGu -5' |
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8135 | 3' | -57.9 | NC_001978.2 | + | 33775 | 0.66 | 0.472144 |
Target: 5'- ---gGCGUUcCGCgaagCGugCUGGGCGCu -3' miRNA: 3'- uguaUGCAGuGCG----GCugGACCCGCGu -5' |
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8135 | 3' | -57.9 | NC_001978.2 | + | 31014 | 1.07 | 0.000498 |
Target: 5'- uACAUACGUCACGCCGACCUGGGCGCAc -3' miRNA: 3'- -UGUAUGCAGUGCGGCUGGACCCGCGU- -5' |
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8135 | 3' | -57.9 | NC_001978.2 | + | 30696 | 0.67 | 0.413431 |
Target: 5'- cGCA-ACGUC-CGCCGGagucgucucgcCCUGGGUgGCAa -3' miRNA: 3'- -UGUaUGCAGuGCGGCU-----------GGACCCG-CGU- -5' |
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8135 | 3' | -57.9 | NC_001978.2 | + | 29383 | 0.67 | 0.421952 |
Target: 5'- gGCGUGCccGUCgucgccgACGCUGACCUaGGGgGCc -3' miRNA: 3'- -UGUAUG--CAG-------UGCGGCUGGA-CCCgCGu -5' |
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8135 | 3' | -57.9 | NC_001978.2 | + | 28037 | 0.66 | 0.472144 |
Target: 5'- -aGUGCGUUcuACGUCGACCcgucGGCGCc -3' miRNA: 3'- ugUAUGCAG--UGCGGCUGGac--CCGCGu -5' |
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8135 | 3' | -57.9 | NC_001978.2 | + | 26281 | 0.7 | 0.26692 |
Target: 5'- cGCGUGCGUCAgGagauucaCG-CCaUGGGCGCGg -3' miRNA: 3'- -UGUAUGCAGUgCg------GCuGG-ACCCGCGU- -5' |
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8135 | 3' | -57.9 | NC_001978.2 | + | 25637 | 0.71 | 0.247022 |
Target: 5'- ---cAgGUCACGCC--CCUGGGCGCc -3' miRNA: 3'- uguaUgCAGUGCGGcuGGACCCGCGu -5' |
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8135 | 3' | -57.9 | NC_001978.2 | + | 23124 | 0.66 | 0.501994 |
Target: 5'- aGCGUgagACG-UACGCCGACgacaccgUUGGGCGUu -3' miRNA: 3'- -UGUA---UGCaGUGCGGCUG-------GACCCGCGu -5' |
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8135 | 3' | -57.9 | NC_001978.2 | + | 22043 | 0.78 | 0.072783 |
Target: 5'- cACGaAgGuUCGCGCCGACCUGGGCaGCGa -3' miRNA: 3'- -UGUaUgC-AGUGCGGCUGGACCCG-CGU- -5' |
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8135 | 3' | -57.9 | NC_001978.2 | + | 21222 | 0.7 | 0.280181 |
Target: 5'- ---cGCGaaGCGCuuaccggccuuguCGACCUGGGCGCGa -3' miRNA: 3'- uguaUGCagUGCG-------------GCUGGACCCGCGU- -5' |
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8135 | 3' | -57.9 | NC_001978.2 | + | 20724 | 0.69 | 0.305968 |
Target: 5'- ---aACGUCGuCGUCGgcaauccgcuucuucGCCUGGGCGUAg -3' miRNA: 3'- uguaUGCAGU-GCGGC---------------UGGACCCGCGU- -5' |
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8135 | 3' | -57.9 | NC_001978.2 | + | 20470 | 0.68 | 0.376879 |
Target: 5'- gGCG-ACGUCG-GCCGACC--GGCGCGa -3' miRNA: 3'- -UGUaUGCAGUgCGGCUGGacCCGCGU- -5' |
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8135 | 3' | -57.9 | NC_001978.2 | + | 19858 | 0.68 | 0.385811 |
Target: 5'- gACGUGCGcauUgGCGCCGugCcGGGgGCc -3' miRNA: 3'- -UGUAUGC---AgUGCGGCugGaCCCgCGu -5' |
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8135 | 3' | -57.9 | NC_001978.2 | + | 18314 | 0.66 | 0.482339 |
Target: 5'- cGCAcGCGcCGCGuuGAgUUGGGCGa- -3' miRNA: 3'- -UGUaUGCaGUGCggCUgGACCCGCgu -5' |
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8135 | 3' | -57.9 | NC_001978.2 | + | 17784 | 0.66 | 0.459056 |
Target: 5'- ---cGCGacaaGCGCCuuaccgaccuggguGACCUGGGCGCc -3' miRNA: 3'- uguaUGCag--UGCGG--------------CUGGACCCGCGu -5' |
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8135 | 3' | -57.9 | NC_001978.2 | + | 16736 | 0.68 | 0.359438 |
Target: 5'- cGCAUaGCGgcaagCGCGCCGguuuccugcccaGCCUGGG-GCAg -3' miRNA: 3'- -UGUA-UGCa----GUGCGGC------------UGGACCCgCGU- -5' |
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8135 | 3' | -57.9 | NC_001978.2 | + | 16729 | 0.68 | 0.393969 |
Target: 5'- --uUGCGUCGa-CCGugcuucaGCCUGGGCGCu -3' miRNA: 3'- uguAUGCAGUgcGGC-------UGGACCCGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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