miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8147 3' -48.7 NC_001978.2 + 25597 0.66 0.953559
Target:  5'- -gAGCGgcAAGUGCCCCggucguugGCUGAgCCu -3'
miRNA:   3'- caUUGCuuUUUACGGGGga------UGGCU-GG- -5'
8147 3' -48.7 NC_001978.2 + 29195 0.66 0.948378
Target:  5'- cGUGACGGAcacAGUgacaaGCCCCgUGCCGcgcgcuucacgcuGCCa -3'
miRNA:   3'- -CAUUGCUUu--UUA-----CGGGGgAUGGC-------------UGG- -5'
8147 3' -48.7 NC_001978.2 + 34102 0.66 0.932936
Target:  5'- gGgcACGGGuuacaacGGUGCCCCUU-CCGGCg -3'
miRNA:   3'- -CauUGCUUu------UUACGGGGGAuGGCUGg -5'
8147 3' -48.7 NC_001978.2 + 5858 0.67 0.927002
Target:  5'- -aGACGGAcGAcgGCaUgCCUGCCGACa -3'
miRNA:   3'- caUUGCUU-UUuaCG-GgGGAUGGCUGg -5'
8147 3' -48.7 NC_001978.2 + 38622 0.67 0.920755
Target:  5'- -cGGCGcuucgcuGAAAUGCCCgacgaaCCUgaACCGGCCc -3'
miRNA:   3'- caUUGCu------UUUUACGGG------GGA--UGGCUGG- -5'
8147 3' -48.7 NC_001978.2 + 23728 0.67 0.914194
Target:  5'- uUGGCGAGcacagcGCCaCCCuUGCCGACg -3'
miRNA:   3'- cAUUGCUUuuua--CGG-GGG-AUGGCUGg -5'
8147 3' -48.7 NC_001978.2 + 24128 0.67 0.913521
Target:  5'- --uACGGAAAGcuaGUUCCCUuccuucagguucaGCCGACCg -3'
miRNA:   3'- cauUGCUUUUUa--CGGGGGA-------------UGGCUGG- -5'
8147 3' -48.7 NC_001978.2 + 4114 0.67 0.912165
Target:  5'- -cGGCGAAGAGccggagccugagccUGCCCCCgcucccCCaGCCa -3'
miRNA:   3'- caUUGCUUUUU--------------ACGGGGGau----GGcUGG- -5'
8147 3' -48.7 NC_001978.2 + 12422 0.67 0.907322
Target:  5'- aUGGCGAu---UGCCgCCgcguuguCCGGCCg -3'
miRNA:   3'- cAUUGCUuuuuACGGgGGau-----GGCUGG- -5'
8147 3' -48.7 NC_001978.2 + 30443 0.67 0.907322
Target:  5'- -gGACGccGAcgGuUCCCUUGCCGACa -3'
miRNA:   3'- caUUGCuuUUuaC-GGGGGAUGGCUGg -5'
8147 3' -48.7 NC_001978.2 + 18012 0.67 0.907322
Target:  5'- ---cUGAAGGGUGCUCCgCgUACCGGuCCg -3'
miRNA:   3'- cauuGCUUUUUACGGGG-G-AUGGCU-GG- -5'
8147 3' -48.7 NC_001978.2 + 17784 0.68 0.892656
Target:  5'- --cGCGAcaa--GCgCCUUACCGACCu -3'
miRNA:   3'- cauUGCUuuuuaCGgGGGAUGGCUGG- -5'
8147 3' -48.7 NC_001978.2 + 12381 0.68 0.88487
Target:  5'- -cGGCGAAGcg-GCaggcguaCCCUGCaCGACCu -3'
miRNA:   3'- caUUGCUUUuuaCGg------GGGAUG-GCUGG- -5'
8147 3' -48.7 NC_001978.2 + 31191 0.68 0.876791
Target:  5'- -cAACGAAAcggagccccacAGUGCagaccuucaCCCUuCCGACCg -3'
miRNA:   3'- caUUGCUUU-----------UUACGg--------GGGAuGGCUGG- -5'
8147 3' -48.7 NC_001978.2 + 19087 0.68 0.873479
Target:  5'- cUAGCaccuucgGCCCCCgccgACUGACCu -3'
miRNA:   3'- cAUUGcuuuuuaCGGGGGa---UGGCUGG- -5'
8147 3' -48.7 NC_001978.2 + 35575 0.68 0.868426
Target:  5'- ---cCGGAGAcgGCgCCCCUgagcgucgGCgCGACCg -3'
miRNA:   3'- cauuGCUUUUuaCG-GGGGA--------UG-GCUGG- -5'
8147 3' -48.7 NC_001978.2 + 21549 0.68 0.868426
Target:  5'- -cGGCGGAGucgaGCCCCC-ACCGggaaGCCu -3'
miRNA:   3'- caUUGCUUUuua-CGGGGGaUGGC----UGG- -5'
8147 3' -48.7 NC_001978.2 + 15486 0.68 0.859781
Target:  5'- -cGACGuc----G-CCCCUGCCGACCc -3'
miRNA:   3'- caUUGCuuuuuaCgGGGGAUGGCUGG- -5'
8147 3' -48.7 NC_001978.2 + 365 0.68 0.859781
Target:  5'- cGUGuCGggGGAguagGCgCCCaUACCGGCUu -3'
miRNA:   3'- -CAUuGCuuUUUa---CGgGGG-AUGGCUGG- -5'
8147 3' -48.7 NC_001978.2 + 29051 0.68 0.859781
Target:  5'- cGUGGCGAcucc-GCCCCCguagaccuUGCCGAauCCg -3'
miRNA:   3'- -CAUUGCUuuuuaCGGGGG--------AUGGCU--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.