miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8151 3' -55.3 NC_001978.2 + 38594 0.68 0.540274
Target:  5'- gUUCGGgaCGGCGGAgcGCCCGgAGUucgaACGCa -3'
miRNA:   3'- gGAGUC--GCCGCUU--CGGGCgUUA----UGCG- -5'
8151 3' -55.3 NC_001978.2 + 9829 0.68 0.529464
Target:  5'- ----cGCGGCGAAGUCgGCAGgcgaaacgAUGCa -3'
miRNA:   3'- ggaguCGCCGCUUCGGgCGUUa-------UGCG- -5'
8151 3' -55.3 NC_001978.2 + 20036 0.68 0.529464
Target:  5'- gCUCAGCGGCc-GGUCCcCAAUACu- -3'
miRNA:   3'- gGAGUCGCCGcuUCGGGcGUUAUGcg -5'
8151 3' -55.3 NC_001978.2 + 24571 0.68 0.529464
Target:  5'- uCgUCGGCGGCGucauGGUCgGCA-UAUGUg -3'
miRNA:   3'- -GgAGUCGCCGCu---UCGGgCGUuAUGCG- -5'
8151 3' -55.3 NC_001978.2 + 23510 0.68 0.518734
Target:  5'- --gCAGCGGCGAAGga-GUAcgACGCg -3'
miRNA:   3'- ggaGUCGCCGCUUCgggCGUuaUGCG- -5'
8151 3' -55.3 NC_001978.2 + 30038 0.68 0.518734
Target:  5'- gCUCAGCGGC-AAGCCggucgGCAAgguCGUc -3'
miRNA:   3'- gGAGUCGCCGcUUCGGg----CGUUau-GCG- -5'
8151 3' -55.3 NC_001978.2 + 9499 0.69 0.487091
Target:  5'- uCUUCAG-GGUGgcGCUCGCG--ACGCu -3'
miRNA:   3'- -GGAGUCgCCGCuuCGGGCGUuaUGCG- -5'
8151 3' -55.3 NC_001978.2 + 34258 0.69 0.486052
Target:  5'- gCCgUCGGCGGagcuugcCGGAGCCaCGCuguacacgACGCg -3'
miRNA:   3'- -GG-AGUCGCC-------GCUUCGG-GCGuua-----UGCG- -5'
8151 3' -55.3 NC_001978.2 + 20684 0.69 0.476746
Target:  5'- aCCUCAGCGGC--AGCguucuucgUCGUcuUGCGCu -3'
miRNA:   3'- -GGAGUCGCCGcuUCG--------GGCGuuAUGCG- -5'
8151 3' -55.3 NC_001978.2 + 40335 0.69 0.466512
Target:  5'- cCCUUcccGCuGCcccagGAAGCCCGCuGUGCGCc -3'
miRNA:   3'- -GGAGu--CGcCG-----CUUCGGGCGuUAUGCG- -5'
8151 3' -55.3 NC_001978.2 + 21406 0.69 0.466512
Target:  5'- nCCUUAcgGGCGAAGCCCcCGG-GCGCg -3'
miRNA:   3'- -GGAGUcgCCGCUUCGGGcGUUaUGCG- -5'
8151 3' -55.3 NC_001978.2 + 8229 0.69 0.466512
Target:  5'- gCUCAGCGGCuc-GCgUGCcGUAUGCc -3'
miRNA:   3'- gGAGUCGCCGcuuCGgGCGuUAUGCG- -5'
8151 3' -55.3 NC_001978.2 + 27113 0.69 0.456391
Target:  5'- -gUCGGCGGgcauUGuGGCCUggGCGGUGCGCg -3'
miRNA:   3'- ggAGUCGCC----GCuUCGGG--CGUUAUGCG- -5'
8151 3' -55.3 NC_001978.2 + 25496 0.69 0.44639
Target:  5'- gCCUCAGCcugGGCGAcgucgAGCCCGaacCGGUcggcgGCGUa -3'
miRNA:   3'- -GGAGUCG---CCGCU-----UCGGGC---GUUA-----UGCG- -5'
8151 3' -55.3 NC_001978.2 + 9802 0.7 0.407656
Target:  5'- uCCUCAGCcugGGUGccgaaGAGCgucacagcggUCGCGAUACGCu -3'
miRNA:   3'- -GGAGUCG---CCGC-----UUCG----------GGCGUUAUGCG- -5'
8151 3' -55.3 NC_001978.2 + 4986 0.7 0.407656
Target:  5'- gCUCAGCGGuCGcacGCUCGCGcgccucaaaGUugGCg -3'
miRNA:   3'- gGAGUCGCC-GCuu-CGGGCGU---------UAugCG- -5'
8151 3' -55.3 NC_001978.2 + 23924 0.71 0.380022
Target:  5'- cCUUCA-CGGCGucGUCagaaGCGGUGCGCa -3'
miRNA:   3'- -GGAGUcGCCGCuuCGGg---CGUUAUGCG- -5'
8151 3' -55.3 NC_001978.2 + 33503 0.71 0.380022
Target:  5'- gCUCAGCGcGCGGucuuucuucGGCCCGUAgccGUAccCGCc -3'
miRNA:   3'- gGAGUCGC-CGCU---------UCGGGCGU---UAU--GCG- -5'
8151 3' -55.3 NC_001978.2 + 39451 0.71 0.371094
Target:  5'- aCUCAGCGGgcuCGAugaucGGUCCGCAAUcaaGCu -3'
miRNA:   3'- gGAGUCGCC---GCU-----UCGGGCGUUAug-CG- -5'
8151 3' -55.3 NC_001978.2 + 26826 0.71 0.362309
Target:  5'- uCCUCAaacGUGGCGAAGggcgucgucUUCGUGAUGCGCc -3'
miRNA:   3'- -GGAGU---CGCCGCUUC---------GGGCGUUAUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.