Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8151 | 3' | -55.3 | NC_001978.2 | + | 21406 | 0.69 | 0.466512 |
Target: 5'- nCCUUAcgGGCGAAGCCCcCGG-GCGCg -3' miRNA: 3'- -GGAGUcgCCGCUUCGGGcGUUaUGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 20684 | 0.69 | 0.476746 |
Target: 5'- aCCUCAGCGGC--AGCguucuucgUCGUcuUGCGCu -3' miRNA: 3'- -GGAGUCGCCGcuUCG--------GGCGuuAUGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 34258 | 0.69 | 0.486052 |
Target: 5'- gCCgUCGGCGGagcuugcCGGAGCCaCGCuguacacgACGCg -3' miRNA: 3'- -GG-AGUCGCC-------GCUUCGG-GCGuua-----UGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 9499 | 0.69 | 0.487091 |
Target: 5'- uCUUCAG-GGUGgcGCUCGCG--ACGCu -3' miRNA: 3'- -GGAGUCgCCGCuuCGGGCGUuaUGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 23510 | 0.68 | 0.518734 |
Target: 5'- --gCAGCGGCGAAGga-GUAcgACGCg -3' miRNA: 3'- ggaGUCGCCGCUUCgggCGUuaUGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 30038 | 0.68 | 0.518734 |
Target: 5'- gCUCAGCGGC-AAGCCggucgGCAAgguCGUc -3' miRNA: 3'- gGAGUCGCCGcUUCGGg----CGUUau-GCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 9829 | 0.68 | 0.529464 |
Target: 5'- ----cGCGGCGAAGUCgGCAGgcgaaacgAUGCa -3' miRNA: 3'- ggaguCGCCGCUUCGGgCGUUa-------UGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 24571 | 0.68 | 0.529464 |
Target: 5'- uCgUCGGCGGCGucauGGUCgGCA-UAUGUg -3' miRNA: 3'- -GgAGUCGCCGCu---UCGGgCGUuAUGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 20036 | 0.68 | 0.529464 |
Target: 5'- gCUCAGCGGCc-GGUCCcCAAUACu- -3' miRNA: 3'- gGAGUCGCCGcuUCGGGcGUUAUGcg -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 38594 | 0.68 | 0.540274 |
Target: 5'- gUUCGGgaCGGCGGAgcGCCCGgAGUucgaACGCa -3' miRNA: 3'- gGAGUC--GCCGCUU--CGGGCgUUA----UGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 38200 | 0.67 | 0.562108 |
Target: 5'- aCgUCAGCGGCuc-GCCC-CG-UGCGCu -3' miRNA: 3'- -GgAGUCGCCGcuuCGGGcGUuAUGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 13641 | 0.67 | 0.573115 |
Target: 5'- aCUCAGCGGCaauGGCgacUCGCGccUAUGCg -3' miRNA: 3'- gGAGUCGCCGcu-UCG---GGCGUu-AUGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 10800 | 0.67 | 0.583065 |
Target: 5'- cCCUUcGCGGCacgccccacagcgGAAGCaaGCGAcgACGCa -3' miRNA: 3'- -GGAGuCGCCG-------------CUUCGggCGUUa-UGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 18161 | 0.67 | 0.595272 |
Target: 5'- gCgUCGGCGcCGGAGUaaCCGCGcuUGCGCu -3' miRNA: 3'- -GgAGUCGCcGCUUCG--GGCGUu-AUGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 28080 | 0.67 | 0.595272 |
Target: 5'- aCUgAGCGGCuuGAGGCCgGUcccAAUGcCGCc -3' miRNA: 3'- gGAgUCGCCG--CUUCGGgCG---UUAU-GCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 27432 | 0.67 | 0.595272 |
Target: 5'- -gUCGGC-GUGAAGUUCGCug-ACGCg -3' miRNA: 3'- ggAGUCGcCGCUUCGGGCGuuaUGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 17589 | 0.67 | 0.606403 |
Target: 5'- -gUCGGCGGagaCGGAgccGCCCGCA--ACGUc -3' miRNA: 3'- ggAGUCGCC---GCUU---CGGGCGUuaUGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 20379 | 0.67 | 0.606403 |
Target: 5'- gCCgaAGCGGCGAAGgCCGaAGUcgagucGCGCc -3' miRNA: 3'- -GGagUCGCCGCUUCgGGCgUUA------UGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 30051 | 0.67 | 0.606403 |
Target: 5'- gCUCAGC-GCauGGCuCCGCAuggugGCGCa -3' miRNA: 3'- gGAGUCGcCGcuUCG-GGCGUua---UGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 19462 | 0.66 | 0.617556 |
Target: 5'- gCCUCAGCGGCaAGGaucuUCGCGcacCGCu -3' miRNA: 3'- -GGAGUCGCCGcUUCg---GGCGUuauGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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